Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N023_RS00980 Genome accession   NZ_CP093321
Coordinates   213996..215489 (+) Length   497 a.a.
NCBI ID   WP_003437409.1    Uniprot ID   -
Organism   Pseudomonas syringae CC440     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 208996..220489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N023_RS00970 (N023_00970) - 209024..209983 (+) 960 WP_024664734.1 hypothetical protein -
  N023_RS00975 (N023_00975) - 210393..213683 (+) 3291 WP_024664735.1 VPA1262 family protein -
  N023_RS00980 (N023_00980) comM 213996..215489 (+) 1494 WP_003437409.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N023_RS00985 (N023_00985) - 215559..216866 (-) 1308 WP_003313973.1 CitMHS family transporter -
  N023_RS00990 (N023_00990) - 217337..218734 (-) 1398 WP_003425915.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53052.88 Da        Isoelectric Point: 7.3250

>NTDB_id=663516 N023_RS00980 WP_003437409.1 213996..215489(+) (comM) [Pseudomonas syringae CC440]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPALTLVGLPEGAVKESKDRVRSAILNSGLDFPARRITLNLAPADLPKDGGR
FDLAIALGLLAASGQVPLVALQDVECLGELALSGAIRPIQGVLPAALAARAAERTLIIPAVNAEEACLASGLRVIAVSHL
LELVAHFNGRTVIAPYQSSGLLHQPKPYPDLSEVQGQTAAKRALVIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVASQVPLTIWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPTGRCRCSTEQVQRYRNKLSGPLLDRIDLHLTVAREATALNPDPTT
SENTASAAAVVAEARDRQQRRQGCANAFLDLPGLREYCALSSVDESWLETACERLTLSLRSAHRLLKVARTLADLEQVDA
INRSHLAEALQYRPSTN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=663516 N023_RS00980 WP_003437409.1 213996..215489(+) (comM) [Pseudomonas syringae CC440]
ATGTCGCTGGCTATCGTCCATAGTCGTGCCCAGGTCGGGGTGGAAGCCCCGGCGGTTACTGTTGAAGCGCATCTGGCCAA
CGGCCTGCCGGCCCTGACGCTGGTGGGGTTGCCGGAGGGGGCGGTCAAGGAGAGCAAGGACCGGGTGCGCAGTGCCATTC
TCAATTCCGGGCTGGATTTTCCGGCGCGGCGGATCACGCTCAACCTTGCGCCGGCTGATTTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGTTTGCTGGCCGCCAGCGGGCAGGTGCCGTTGGTTGCGTTGCAGGATGTTGAGTGCCT
GGGCGAGTTGGCGTTGTCGGGGGCGATTCGGCCGATTCAGGGTGTGCTGCCTGCTGCACTCGCGGCACGTGCTGCGGAGC
GGACGCTGATCATTCCGGCGGTGAACGCCGAGGAAGCCTGTCTGGCGTCGGGGCTGCGGGTGATTGCTGTGAGCCACTTG
CTGGAGCTGGTCGCGCATTTCAACGGGCGCACGGTGATTGCGCCGTATCAATCCAGCGGTTTGCTGCATCAGCCCAAGCC
GTATCCGGACCTTAGCGAAGTGCAGGGCCAGACCGCCGCGAAGCGTGCCTTGGTGATCGCCGCTGCGGGGGCGCATAACC
TGCTGTTCAGCGGGCCGCCCGGCACTGGCAAGACGCTGCTCGCCAGCCGGCTGCCGGGTTTGTTGCCGCCGCTGGACGAG
CATGAAGCGCTTGAAGTGGCAGCGATTCAGTCGGTTGCCAGCCAGGTGCCGCTGACCATTTGGCCGCAGCGGCCGTTTCG
ACAGCCGCATCACTCGGCGTCCGGGCCTGCGTTGGTGGGCGGTGGCAGTCGTCCGCAACCTGGCGAGATCACGTTGGCGC
ATCACGGCGTTCTATTCCTAGACGAGTTGCCGGAGTTTGATCGCCGTGTGCTGGAGGTTTTGCGCGAGCCGCTGGAGTCC
GGGCATATCGTGATTTCCCGGGCGCGGGATCGCGTGCGCTTTCCGGCGCGGTTCCAGTTGGTGGCAGCGATGAACCCGTG
TCCCTGTGGCTATCTTGGCGAGCCGACCGGGCGCTGCCGTTGTTCCACCGAGCAGGTGCAGCGCTATCGCAACAAGTTGT
CCGGCCCGCTGCTGGACCGGATCGACCTGCACCTGACCGTCGCTCGGGAAGCCACCGCCCTCAACCCTGACCCGACCACC
AGTGAAAACACTGCCAGTGCCGCAGCCGTGGTCGCCGAGGCGAGAGACCGTCAGCAACGTCGTCAGGGCTGTGCCAATGC
GTTTCTCGATCTGCCGGGGCTGCGTGAGTACTGCGCGCTGTCCAGTGTCGATGAAAGCTGGCTGGAGACGGCGTGTGAGC
GTCTGACCCTGTCGTTGCGCTCGGCGCATCGATTGCTGAAGGTGGCGCGGACGTTGGCGGATCTGGAGCAGGTGGACGCG
ATCAACCGCAGTCATCTGGCCGAGGCCTTGCAGTATCGGCCTTCAACCAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Glaesserella parasuis strain SC1401

53.8

100

0.541
  comM Vibrio campbellii strain DS40M4

53.939

99.598

0.537
  comM Haemophilus influenzae Rd KW20

53

100

0.533
  comM Legionella pneumophila str. Paris

48.713

100

0.495
  comM Legionella pneumophila strain ERS1305867

48.713

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.459