Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LIW09_RS11855 Genome accession   NZ_CP093311
Coordinates   2518593..2520107 (+) Length   504 a.a.
NCBI ID   WP_256645811.1    Uniprot ID   -
Organism   Thermomonas paludicola strain IMCC34681     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2513593..2525107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIW09_RS11830 speE 2514161..2515015 (+) 855 WP_256645807.1 polyamine aminopropyltransferase -
  LIW09_RS11835 - 2515098..2516996 (+) 1899 WP_256645808.1 diguanylate cyclase -
  LIW09_RS11840 - 2517080..2517796 (+) 717 WP_256645809.1 phosphatase PAP2 family protein -
  LIW09_RS11845 - 2517810..2518148 (-) 339 WP_256645810.1 P-II family nitrogen regulator -
  LIW09_RS11850 - 2518316..2518582 (+) 267 WP_256647236.1 accessory factor UbiK family protein -
  LIW09_RS11855 comM 2518593..2520107 (+) 1515 WP_256645811.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LIW09_RS11860 - 2520115..2521362 (-) 1248 WP_256645812.1 putative peptide maturation dehydrogenase -
  LIW09_RS11865 - 2521430..2521717 (+) 288 WP_256645813.1 NHLP-related RiPP peptide -
  LIW09_RS11870 - 2521668..2524322 (-) 2655 WP_256645814.1 putative peptide modification system cyclase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53356.05 Da        Isoelectric Point: 8.5900

>NTDB_id=663475 LIW09_RS11855 WP_256645811.1 2518593..2520107(+) (comM) [Thermomonas paludicola strain IMCC34681]
MGLAIVHSRARVGVRAPEVRVEVHLAGGLPAMSIVGLPEAAVREAKDRVRAAIQCAQFEFPARRITVNLAPADLPKDGGR
YDLAIALGILAASGQLSSEALAGWEFLGELALTGEIRTVDGALAGALAARDSGRRLIVPPGNGAEAALASGIEIRTARTL
LEVCAALEARRELPLAVPQPCRDTAPPDLTDVRGQAQARRALEIAAAGSHHLLLVGPPGSGKTLLASRLCGILPSPSESE
ALEAASIASASSRGLDLARWRQRPFRAPHHTASAVALVGGGANPSPGEISLAHHGVLFLDELPEWSRHALEVLREPLESG
SVCISRAARHCDFPARFQLVAAMNPCPCGWAGDPSGRCLCNDEMIRRYRARISGPLLERIDLHVEVPRLPPTALRTDGAT
GESSASVRARVVTARERQLARSAQPNARLDQSQTNAFCRLTPGDSTLLERAVDGLQLSARSLHRILRVARTIADLAGSDA
IQTPHLTEAIGYRKLERGHARAAA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=663475 LIW09_RS11855 WP_256645811.1 2518593..2520107(+) (comM) [Thermomonas paludicola strain IMCC34681]
ATGGGTCTTGCGATCGTGCACAGCCGTGCGCGCGTGGGCGTGCGTGCGCCCGAAGTCCGGGTCGAGGTGCACCTGGCCGG
CGGCTTGCCCGCCATGTCCATCGTTGGCCTGCCGGAAGCGGCGGTGCGCGAAGCCAAGGATCGCGTGCGCGCTGCGATCC
AATGCGCGCAGTTCGAATTCCCCGCGCGCAGGATCACCGTCAATCTGGCGCCCGCCGACCTGCCCAAGGACGGCGGCCGC
TATGACCTTGCCATTGCCTTGGGCATCCTTGCCGCGAGCGGCCAGCTCAGCAGCGAGGCACTGGCGGGTTGGGAGTTCCT
GGGCGAGCTGGCCCTGACCGGCGAAATCCGCACGGTGGACGGCGCGCTGGCTGGGGCGTTGGCGGCGCGTGACAGCGGCC
GGCGACTCATCGTGCCACCCGGCAATGGTGCCGAAGCGGCCTTGGCCAGCGGGATCGAGATACGCACCGCGCGCACCTTG
CTGGAAGTCTGCGCGGCGCTGGAGGCACGCAGGGAATTGCCGCTGGCCGTCCCCCAACCCTGCCGCGACACAGCACCGCC
TGACCTCACCGACGTGCGCGGTCAGGCGCAGGCGCGGCGTGCATTGGAGATCGCGGCGGCGGGTTCGCACCACCTGCTGC
TGGTAGGCCCGCCCGGTAGCGGCAAGACCCTGCTCGCCTCGCGCCTGTGCGGCATCTTGCCATCGCCCAGCGAGTCCGAA
GCGCTGGAAGCCGCCAGCATCGCCTCCGCCAGCAGTCGCGGCCTGGATCTGGCGCGTTGGCGCCAGCGTCCTTTCCGCGC
GCCGCACCACACCGCCAGCGCGGTGGCGCTGGTCGGTGGCGGTGCCAACCCGAGCCCCGGCGAAATCTCGCTGGCCCACC
ATGGCGTGCTGTTCCTCGATGAGCTGCCGGAATGGAGCCGGCACGCGCTGGAAGTCCTGCGCGAGCCGCTGGAGTCGGGC
AGCGTGTGCATTTCGCGGGCGGCCCGGCACTGCGACTTTCCCGCCCGCTTCCAGCTGGTTGCCGCGATGAATCCCTGCCC
CTGTGGCTGGGCCGGCGACCCCTCCGGACGCTGCCTGTGCAACGACGAGATGATTCGCCGCTACCGCGCGCGCATCTCCG
GGCCGCTGCTTGAACGCATCGATCTGCACGTGGAAGTCCCGCGCCTGCCGCCCACTGCACTTCGCACCGATGGCGCCACC
GGCGAATCCAGCGCCAGTGTCCGCGCACGCGTCGTCACCGCACGCGAGCGCCAGCTGGCACGCAGCGCGCAACCCAATGC
GCGGCTGGACCAATCACAGACCAATGCGTTCTGCCGGCTGACCCCCGGCGACTCCACCCTGCTGGAGCGCGCGGTGGACG
GCCTCCAGCTGTCCGCGCGCTCACTGCACCGCATCCTGCGCGTGGCCCGCACGATCGCCGACCTGGCCGGCAGCGACGCC
ATCCAGACGCCGCACCTGACCGAGGCCATCGGCTATCGCAAGCTGGAGCGTGGGCACGCGCGCGCCGCCGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.511

99.008

0.55
  comM Vibrio campbellii strain DS40M4

54.509

99.008

0.54
  comM Haemophilus influenzae Rd KW20

53.373

100

0.534
  comM Glaesserella parasuis strain SC1401

52.684

99.802

0.526
  comM Legionella pneumophila str. Paris

49.095

98.611

0.484
  comM Legionella pneumophila strain ERS1305867

49.095

98.611

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.359

100

0.44