Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PST29_RS29460 Genome accession   NZ_AP014628
Coordinates   6578972..6580465 (+) Length   497 a.a.
NCBI ID   WP_060844952.1    Uniprot ID   A0AAD1BFQ0
Organism   Pseudomonas sp. St29     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6573972..6585465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PST29_RS29430 (PST29_5978) - 6574511..6575206 (+) 696 WP_060841687.1 HAD family hydrolase -
  PST29_RS29435 (PST29_5979) sutA 6575335..6575658 (-) 324 WP_016965454.1 transcriptional regulator SutA -
  PST29_RS29440 (PST29_5980) - 6575761..6576186 (-) 426 WP_060841688.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PST29_RS29445 (PST29_5981) - 6576397..6577734 (-) 1338 WP_060841689.1 ammonium transporter -
  PST29_RS29450 (PST29_5982) glnK 6577768..6578106 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PST29_RS29455 (PST29_5983) - 6578522..6578782 (+) 261 WP_016965457.1 accessory factor UbiK family protein -
  PST29_RS29460 (PST29_5984) comM 6578972..6580465 (+) 1494 WP_060844952.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PST29_RS29465 (PST29_5985) - 6580470..6581684 (-) 1215 WP_060841692.1 aldose 1-epimerase family protein -
  PST29_RS29470 (PST29_5986) - 6581798..6582376 (-) 579 WP_060844953.1 TetR/AcrR family transcriptional regulator -
  PST29_RS29475 (PST29_5987) - 6582403..6583416 (+) 1014 WP_060841694.1 ABC transporter six-transmembrane domain-containing protein -
  PST29_RS29480 (PST29_5988) - 6583443..6585419 (-) 1977 WP_060844954.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53089.90 Da        Isoelectric Point: 7.9238

>NTDB_id=66345 PST29_RS29460 WP_060844952.1 6578972..6580465(+) (comM) [Pseudomonas sp. St29]
MSLAIIHSRAQVGVQAPAVSVEVHLANGLPSLTLVGLPEAAVKESKDRVRSAILNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPAQALDNIECLGELALSGAVRAVRGVLPAALAARDAGRTLLVPRANAEEACLASGLEVIAVEHL
LQAVAHLNGQAPIAPYISDGLTQSHSPYPDLREVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLQE
DEALEVAAIQSVTSHTPLRHWPQRPFRQPHHSASGAALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GQIIISRARDRVQFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREVTALNPRPQP
GNDSAEAAARVARARQLQGQRQGCANAFLDLPGLRRHCQLSTADEHWLEAACERLNLSLRAAHRLLKVARTLADLEQAAS
ISRDHLAEALHYRPGAD

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=66345 PST29_RS29460 WP_060844952.1 6578972..6580465(+) (comM) [Pseudomonas sp. St29]
ATGTCCCTGGCGATCATTCACAGCCGTGCCCAGGTCGGCGTGCAGGCACCGGCGGTCAGCGTTGAAGTGCACCTGGCCAA
TGGCTTGCCAAGCCTGACCCTGGTGGGCCTGCCGGAAGCTGCAGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATTC
TCAACGCCGGGTTCGATTTCCCCGCGCGCCGCATCACCCTCAACCTGGCTCCGGCGGACCTGCCCAAGGATGGCGGGCGC
TTCGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCAGCGTGCAAGTACCGGCGCAGGCCCTGGACAACATCGAATGCCT
GGGGGAACTGGCGCTGTCCGGAGCAGTAAGGGCGGTGCGCGGCGTACTCCCTGCCGCACTGGCGGCGCGCGACGCCGGAC
GCACCCTGCTGGTGCCCCGCGCCAATGCCGAAGAAGCCTGCCTGGCCAGTGGCCTGGAGGTGATCGCGGTCGAGCATCTG
CTGCAAGCCGTGGCCCATCTCAACGGCCAGGCACCGATAGCGCCTTACATCAGCGACGGCCTGACACAGAGCCACTCCCC
CTACCCCGATCTTCGCGAAGTACAGGGCCAGCTCGCCGCCAAGCGCGCCTTGCTGATCGCCGCGGCCGGTGCCCACAACC
TGCTGTTCAGCGGCCCGCCAGGCACCGGCAAGACCCTGCTGGCCAGCCGTCTGCCCGGCCTGTTGCCCCCCTTGCAGGAG
GACGAGGCCCTGGAAGTGGCGGCGATTCAATCGGTGACCAGCCACACGCCCCTGCGCCACTGGCCCCAGCGGCCGTTTCG
TCAGCCTCATCATTCGGCTTCGGGGGCGGCGCTGGTCGGAGGCGGCTCCAAACCCCAACCCGGGGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTCGATGAGCTACCGGAGTTCGATCGCAAGGTATTGGAGGTCCTGCGCGAGCCCATGGAGTCC
GGGCAGATCATCATCTCCCGGGCCCGCGACCGGGTGCAGTTCCCGGCACGCTTCCAACTGGTCGCGGCGATGAACCCCTG
CCCCTGCGGATACCTTGGCGAACCCAGCGGACGCTGCCGCTGCACGCCGGAACAGATCCAGCGCTATCGCAACAAGTTGT
CCGGCCCGCTGCTCGATCGCATCGACCTGCACCTGACCGTGGCCCGCGAGGTCACCGCCCTCAACCCCAGGCCACAACCG
GGCAACGACAGCGCCGAAGCCGCCGCCAGAGTCGCCCGGGCACGCCAGCTGCAAGGCCAGCGCCAGGGCTGTGCCAACGC
CTTTCTCGACCTGCCCGGCCTGCGGCGCCATTGCCAGTTATCCACAGCCGACGAGCACTGGCTGGAAGCGGCCTGCGAAC
GCTTGAACCTGTCGTTGCGCGCCGCTCACCGCCTGCTCAAGGTGGCCAGGACCCTGGCCGACCTGGAGCAGGCGGCAAGC
ATCAGTCGCGACCATCTGGCAGAGGCGCTGCACTATCGTCCCGGCGCCGATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.566

99.598

0.563
  comM Vibrio cholerae strain A1552

56

100

0.563
  comM Glaesserella parasuis strain SC1401

56

100

0.563
  comM Haemophilus influenzae Rd KW20

55.4

100

0.557
  comM Legionella pneumophila str. Paris

49.407

100

0.503
  comM Legionella pneumophila strain ERS1305867

49.407

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.059

100

0.459

Multiple sequence alignment