Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MOO40_RS00645 Genome accession   NZ_CP093308
Coordinates   146168..147682 (-) Length   504 a.a.
NCBI ID   WP_241871547.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain AC185     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 141168..152682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOO40_RS00620 (MOO40_00620) - 142282..142917 (-) 636 WP_011707867.1 nicotinamidase -
  MOO40_RS00625 (MOO40_00625) - 142993..143643 (+) 651 WP_011707866.1 DNA mismatch repair protein MutT -
  MOO40_RS00630 (MOO40_00630) - 143743..144249 (+) 507 WP_241871544.1 DUF523 domain-containing protein -
  MOO40_RS00635 (MOO40_00635) - 144174..145139 (-) 966 WP_241871545.1 acyltransferase -
  MOO40_RS00640 (MOO40_00640) - 145133..146047 (-) 915 WP_241871546.1 acyltransferase -
  MOO40_RS00645 (MOO40_00645) comM 146168..147682 (-) 1515 WP_241871547.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MOO40_RS00650 (MOO40_00650) ilvG 148066..149712 (+) 1647 WP_241871548.1 acetolactate synthase 2 catalytic subunit -
  MOO40_RS00655 (MOO40_00655) ilvM 149709..149987 (+) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  MOO40_RS00660 (MOO40_00660) - 150000..150944 (+) 945 WP_128834710.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54834.84 Da        Isoelectric Point: 7.9895

>NTDB_id=663388 MOO40_RS00645 WP_241871547.1 146168..147682(-) (comM) [Aeromonas hydrophila strain AC185]
MSLAVVYSRASLGVAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQITDALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVNFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRERVLGARERMLSRNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLRLSIRAWHRILRVSRTIADLAGRQTI
EKEHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=663388 MOO40_RS00645 WP_241871547.1 146168..147682(-) (comM) [Aeromonas hydrophila strain AC185]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCTTGGGTGTCGCGGCCCCGCAAGTGACGGTGGAAGTCCATTTATCCAA
CGGGCTGCCCGCCTTCAACATGGTGGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGC
TTCGATCTGGCCATCGCCATCGGAATTCTCGCCGCTTCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGCGAACTGGCCCTGACCGGCGAGATCCGTCCCGTACTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCAGGGC
GTACCCTGCTGGTACCGCGAGAGAACGGTCCCGAGGCCTCGCTAATCCAAGACGCCGAAGTGCGCACCGCCCATCAGCTG
CTAGCCGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCGCTGCCGGATCCCCAGATCACGGATGCCCTGCCCGATGT
GCCGGATCTGCAGGACGTGATCGGCCAGTCCCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCACCCGGCACCGGCAAGAGCATGCTGGCCAGCCGATTGCCCGGCATCTTGCCGCCGCTGAGCGAACAG
GAGGCACAGCAGACCGCCGCCATCCACTCCATCGGTGGCCTCACCCCGCGGGCCGGTCACTGGCATCACAGGCCCTATCG
CACGCCGCACCACAGCGCCTCGGCGGTGGCGCTGGTGGGGGGTGGCAGTCACCCAAGGCCCGGTGAAATTTCGTTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAACTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGTGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGCCAGGTGAATTTCCCCGCCCGCTTCCAGCTGGTAGGCGCCATGAACCCCAG
CCCTTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTACGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTAGAGGTACCGCTGCTGCCCAAGGGCAGCCTGACCGGCAAGGCGGAGCGGGGA
GAGTCGAGCCAGCAGATCCGCGAACGGGTGCTGGGGGCGCGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAACCT
GCTTGATAGCCGTGAAATCGAAGAAATTTGCCGCTTATCGCCGCAGGATGCCGAGTTTCTGGAGAACGCCATCCAGAAGC
TGAGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTGTCGCGCACCATAGCCGATCTGGCAGGACGGCAGACCATC
GAGAAGGAGCACCTGATCGAGGCGCTCGGCTACCGGGCCATGGACCGGCTGCTGTCGCGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.221

99.802

0.631
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.552

100

0.609
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.275

100

0.468