Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MMW58_RS27925 Genome accession   NZ_CP093276
Coordinates   5800785..5802305 (+) Length   506 a.a.
NCBI ID   WP_241722520.1    Uniprot ID   -
Organism   Raoultella sp. HC6     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5795785..5807305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMW58_RS27905 - 5797346..5798275 (-) 930 WP_041143466.1 branched-chain amino acid transaminase -
  MMW58_RS27910 ilvM 5798292..5798549 (-) 258 WP_041143465.1 acetolactate synthase 2 small subunit -
  MMW58_RS27915 ilvG 5798546..5800192 (-) 1647 WP_241722519.1 acetolactate synthase 2 catalytic subunit -
  MMW58_RS27920 ilvL 5800333..5800431 (-) 99 WP_001311244.1 ilv operon leader peptide -
  MMW58_RS27925 comM 5800785..5802305 (+) 1521 WP_241722520.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MMW58_RS27930 - 5802329..5802667 (-) 339 WP_041143462.1 DUF413 domain-containing protein -
  MMW58_RS27935 hdfR 5802786..5803607 (+) 822 WP_133601441.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54702.81 Da        Isoelectric Point: 7.6865

>NTDB_id=662922 MMW58_RS27925 WP_241722520.1 5800785..5802305(+) (comM) [Raoultella sp. HC6]
MSLAIVYTRAALGISAPLITIEVHISSGLPGLTMVGLPETTVREARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLEAPGLNQYEFIGELALTGALRGVPGAISSAMEAIRAGRQIIVAEDNAAEVGLIGGGDCLIAGHL
QEVCAFVAGQHPLSPPVAAAEDPQETRHDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLVSTNYATTRWRHRPFRAPHHSASVAAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRTRAKIDYPAHFQLIAAMNPSPTGHYQGHHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGVLSQQGGGG
EDSATVRRRVLAARERQLARQNKLNADLDNSEMKTWCALNKNDAIWLEQTLTQLGLSIRAWQRLLKVARTIADIKDDPRI
ERHHLQEALGYRAIDRMLNHLQKLMP

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=662922 MMW58_RS27925 WP_241722520.1 5800785..5802305(+) (comM) [Raoultella sp. HC6]
ATGTCACTCGCGATCGTCTACACGCGGGCCGCTCTCGGTATCAGCGCCCCGCTTATTACTATTGAGGTTCATATCAGCAG
CGGCCTTCCCGGACTAACTATGGTTGGCCTGCCGGAAACAACCGTCAGGGAGGCGCGTGACCGGGTGCGCAGCGCAATCA
TTAACAGTGGCTATACCTTCCCGGCGAAAAAAATCACCATTAACCTCGCGCCTGCCGATTTGCCAAAAGAGGGAGGGCGG
TACGATCTCCCTATCGCTCTCGCGCTTCTGGTCGCCTCCGAGCAGCTAGAGGCCCCCGGACTGAATCAATACGAGTTTAT
CGGCGAGCTCGCGCTTACAGGGGCCCTGCGCGGCGTTCCCGGCGCTATCTCCAGCGCCATGGAGGCCATCAGGGCCGGAC
GGCAGATTATTGTAGCCGAAGATAACGCTGCGGAAGTGGGGCTGATTGGCGGCGGCGACTGTCTTATCGCCGGACATCTG
CAGGAGGTCTGCGCCTTTGTGGCGGGACAGCATCCGCTCTCCCCTCCCGTGGCCGCAGCAGAAGATCCGCAGGAAACACG
CCACGATTTACGCGACGTCATTGGCCAACAGCAGGGCAAGCGTGCGCTGGAAATCGTCGCTGCCGGCGGGCATAACCTGC
TGTTAATCGGCCCCCCAGGTACAGGAAAAACGATGCTTGCCAGCCGGTTACCGGGATTACTCCCCCCGCTAAGCAATCAG
GAGGCGCTTGAAAGCGCTGCTATTCTCAGTCTGGTGAGCACCAACTACGCGACCACGCGCTGGCGCCACAGGCCGTTTCG
CGCCCCGCATCACAGCGCCTCGGTCGCGGCTATGGTCGGCGGTGGTGCCATACCTGCGCCCGGCGAGATCTCACTGGCCC
ACAATGGGGTGCTGTTTCTTGACGAGCTGCCGGAGTTTGAACGCAGAGTGCTGGATGCCCTGCGCGAGCCAATTGAATCG
GGAAAAATACATATTTCTCGCACCCGGGCCAAAATTGACTATCCGGCGCATTTCCAGCTGATTGCGGCCATGAATCCCAG
TCCGACCGGACATTATCAGGGTCATCACAATCGCGCCTCTCCCGAGCAGACGCTGCGCTATCTGGGGAGGCTGTCCGGCC
CCTTCCTTGACCGCTTCGATCTCTCTTTGGAAATACCGCTGCCGCCGCCCGGAGTACTCAGCCAGCAAGGTGGTGGTGGA
GAGGACAGTGCGACGGTCCGCCGAAGGGTTCTTGCCGCGCGTGAGAGGCAGCTGGCCCGACAGAACAAGCTCAACGCTGA
TTTAGATAATAGTGAGATGAAAACCTGGTGTGCGTTGAATAAGAACGATGCCATCTGGCTTGAACAGACCCTGACGCAGC
TAGGACTCTCAATACGGGCCTGGCAACGGCTGCTTAAGGTGGCGAGGACGATTGCCGATATAAAGGACGATCCGCGTATC
GAACGCCATCATCTGCAGGAGGCGCTGGGCTATCGGGCGATAGACCGGATGTTGAACCATCTGCAAAAGCTTATGCCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.136

100

0.595
  comM Vibrio cholerae strain A1552

59.642

99.407

0.593
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio campbellii strain DS40M4

58.167

99.209

0.577
  comM Legionella pneumophila str. Paris

48.185

98.024

0.472
  comM Legionella pneumophila strain ERS1305867

48.185

98.024

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.269

100

0.443