Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MND42_RS22575 Genome accession   NZ_CP093154
Coordinates   4656326..4657846 (+) Length   506 a.a.
NCBI ID   WP_023309657.1    Uniprot ID   -
Organism   Enterobacter asburiae strain 5549     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4651326..4662846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MND42_RS22550 (MND42_22550) ilvE 4652892..4653821 (-) 930 WP_023309654.1 branched-chain-amino-acid transaminase -
  MND42_RS22555 (MND42_22555) ilvM 4653840..4654103 (-) 264 WP_024907956.1 acetolactate synthase 2 small subunit -
  MND42_RS22560 (MND42_22560) ilvG 4654100..4655746 (-) 1647 WP_045403897.1 acetolactate synthase 2 catalytic subunit -
  MND42_RS22565 (MND42_22565) ilvX 4655749..4655799 (-) 51 WP_166792073.1 peptide IlvX -
  MND42_RS22570 (MND42_22570) ilvL 4655886..4655984 (-) 99 WP_001311244.1 ilv operon leader peptide -
  MND42_RS22575 (MND42_22575) comM 4656326..4657846 (+) 1521 WP_023309657.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MND42_RS22580 (MND42_22580) - 4657877..4658215 (-) 339 WP_023309658.1 DUF413 domain-containing protein -
  MND42_RS22585 (MND42_22585) hdfR 4658334..4659155 (+) 822 WP_045403902.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54923.85 Da        Isoelectric Point: 6.8204

>NTDB_id=662019 MND42_RS22575 WP_023309657.1 4656326..4657846(+) (comM) [Enterobacter asburiae strain 5549]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAEVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=662019 MND42_RS22575 WP_023309657.1 4656326..4657846(+) (comM) [Enterobacter asburiae strain 5549]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGCAA
TGGGCTACCCGGACTCACTCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGAGCAGGAC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCATCGCAGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGTCATGAACTGTCCGAGCCGGAGGAGTGTGATGATGCTATAGCGGATGCACC
GGAGGATCTCAGCGAGATTATGGGGCAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTTC
TGTTAATTGGCCCGCCGGGTACGGGTAAAACCATGCTGGCAAGCAGGTTGAGTGGGTTACTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCCGCCATATATAGCCTTATCAGTTCGACGTCGTTGCAAAAACAGTGGCGCCGTCGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGTGGCGGGGCGATTCCGGGGCCTGGAGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTTGATGAGCTGCCTGAGTTTGAGCGCCGAGTGCTGGATGCCCTGAGGGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCACGCGAGCCAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGTCACTACCAGGGAAACCATAACCGCTGTACACCAGAGCAAACATTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATTCCCCTTCCCCCGCCGGGTCTGCTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGAGGTACGCGAACGGGTGATTGCAGCCCAGACGCGGCAGTACGCTCGTCAGAACAGGCTGAATGCACG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCTCTTAACGTTGAGGATGCGGGATGGCTGGAGGAGACGTTGACGCGGT
TCGGACTGTCCATACGTGCGTGGCAGCGTTTGCTGAAGGTGGCCAGAACTATTGCTGACGTGGAGGGGTGCACTGACATT
GAGAGGAAACATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439