Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   OG306_RS11775 Genome accession   NZ_CP108494
Coordinates   2696363..2696797 (-) Length   144 a.a.
NCBI ID   WP_323183848.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01241     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2691363..2701797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG306_RS11755 (OG306_11745) - 2691396..2692314 (+) 919 Protein_2329 aldo/keto reductase -
  OG306_RS11760 (OG306_11750) - 2692398..2692643 (+) 246 WP_266746140.1 hypothetical protein -
  OG306_RS11765 (OG306_11755) - 2692668..2693552 (-) 885 WP_266746141.1 YceI family protein -
  OG306_RS11770 (OG306_11760) - 2693763..2696366 (-) 2604 WP_266746142.1 ComEC/Rec2 family competence protein -
  OG306_RS11775 comEA/celA/cilE 2696363..2696797 (-) 435 WP_323183848.1 ComEA family DNA-binding protein Machinery gene
  OG306_RS11780 (OG306_11770) - 2697655..2698500 (-) 846 WP_266746144.1 DegV family protein -
  OG306_RS11785 (OG306_11775) - 2698609..2699364 (-) 756 WP_266746145.1 hypothetical protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 14454.39 Da        Isoelectric Point: 8.7917

>NTDB_id=661647 OG306_RS11775 WP_323183848.1 2696363..2696797(-) (comEA/celA/cilE) [Streptomyces sp. NBC_01241]
MSGKVRLPGIHQLPSGARVADAIRAAGGARPGVDLAGLNRARVLMDGEQIVVGAPPGPPVMGGTGGAATGGTGTGSGGTT
TGTVSLNLATVEQLDSLPGVGPVLAQRIVDYRTQHGGFRSVDELREVNGIGDRRFADLQPLVVP

Nucleotide


Download         Length: 435 bp        

>NTDB_id=661647 OG306_RS11775 WP_323183848.1 2696363..2696797(-) (comEA/celA/cilE) [Streptomyces sp. NBC_01241]
GTGAGCGGGAAGGTGCGACTGCCGGGGATCCATCAACTGCCGTCCGGCGCACGGGTCGCCGACGCGATCCGGGCCGCGGG
CGGAGCCCGGCCCGGTGTCGACCTCGCCGGGCTCAACCGGGCGCGGGTGCTCATGGACGGGGAGCAGATCGTGGTGGGCG
CTCCACCGGGCCCTCCGGTCATGGGCGGGACGGGAGGTGCCGCCACGGGCGGCACCGGCACCGGCAGCGGCGGCACCACA
ACGGGAACGGTCAGCCTCAATCTGGCGACCGTCGAACAACTCGACTCCCTGCCCGGCGTCGGTCCGGTTCTCGCCCAGCG
CATCGTCGACTATCGCACCCAGCACGGCGGTTTCCGTTCCGTCGACGAACTCCGCGAAGTCAACGGGATCGGCGATCGCC
GGTTCGCCGACCTCCAGCCTCTGGTGGTGCCATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(82-142)

SLBB domain (SLBB)

(2-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

37.324

98.611

0.368
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

37.324

98.611

0.368
  comEA/celA/cilE Streptococcus pneumoniae Rx1

37.324

98.611

0.368
  comEA/celA/cilE Streptococcus pneumoniae D39

37.324

98.611

0.368
  comEA/celA/cilE Streptococcus pneumoniae R6

37.324

98.611

0.368
  comEA Streptococcus thermophilus LMD-9

39.552

93.056

0.368