Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MMZ72_RS28355 Genome accession   NZ_CP093021
Coordinates   6107927..6109420 (+) Length   497 a.a.
NCBI ID   WP_024916789.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H09     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6102927..6114420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ72_RS28325 (MMZ72_28325) - 6102972..6103889 (-) 918 WP_024916786.1 fimbrial protein -
  MMZ72_RS28330 (MMZ72_28330) sutA 6104430..6104747 (-) 318 WP_024916787.1 transcriptional regulator SutA -
  MMZ72_RS28335 (MMZ72_28335) - 6104825..6105250 (-) 426 WP_024916788.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  MMZ72_RS28340 (MMZ72_28340) - 6105477..6106805 (-) 1329 WP_003109815.1 ammonium transporter -
  MMZ72_RS28345 (MMZ72_28345) glnK 6106846..6107184 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  MMZ72_RS28350 (MMZ72_28350) - 6107624..6107884 (+) 261 WP_003096478.1 accessory factor UbiK family protein -
  MMZ72_RS28355 (MMZ72_28355) comM 6107927..6109420 (+) 1494 WP_024916789.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MMZ72_RS28360 (MMZ72_28360) betT 6109545..6111530 (+) 1986 WP_024916790.1 choline BCCT transporter BetT -
  MMZ72_RS28365 (MMZ72_28365) pchP 6111573..6112622 (-) 1050 WP_024916791.1 phosphorylcholine phosphatase -
  MMZ72_RS28370 (MMZ72_28370) - 6112773..6113690 (-) 918 WP_024916792.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53067.02 Da        Isoelectric Point: 7.9241

>NTDB_id=661515 MMZ72_RS28355 WP_024916789.1 6107927..6109420(+) (comM) [Pseudomonas aeruginosa strain H09]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGMECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLLPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEVSERVGAARHRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRATNCG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=661515 MMZ72_RS28355 WP_024916789.1 6107927..6109420(+) (comM) [Pseudomonas aeruginosa strain H09]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCGCCCTGTGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTCCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACTCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGCTACCCGGCACCGCCCTCGACGGCATGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGTGCGATCCGGCCAGTCCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAAATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCTGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
CTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCACACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAGGCCCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGTCCGTTCCG
CCAGCCGCACCATTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCAGGCGAGATCACCCTGGCAC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAATTCGACCGCAAGGTCCTGGAAGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGCGGTTACCTCGGCGATCCCAGCGGTCGCTGCCGCTGCACCCCGGAGCAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGGCCGCTGCTCGACCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGGTCAGCGAACGGGTCGGCGCCGCACGGCACCGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGATCTCCAGGCGATGCACCGCAATTGTGCGCTCGCCGAAGCGGACCGTCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAATATCGGGCGACGAACTGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.627

100

0.567
  comM Haemophilus influenzae Rd KW20

55.467

100

0.561
  comM Vibrio cholerae strain A1552

55.823

100

0.559
  comM Glaesserella parasuis strain SC1401

54.473

100

0.551
  comM Legionella pneumophila str. Paris

49.703

100

0.505
  comM Legionella pneumophila strain ERS1305867

49.703

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.776

100

0.469