Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MML47_RS20350 Genome accession   NZ_CP092971
Coordinates   4462417..4463937 (+) Length   506 a.a.
NCBI ID   WP_241442335.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain NJ01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4457417..4468937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MML47_RS20325 (MML47_20325) - 4458496..4458715 (+) 220 Protein_3876 hypothetical protein -
  MML47_RS20335 (MML47_20335) - 4458996..4460981 (-) 1986 WP_053501955.1 beta-N-acetylglucosaminidase domain-containing protein -
  MML47_RS20340 (MML47_20340) - 4461594..4461968 (-) 375 WP_277623243.1 P-II family nitrogen regulator -
  MML47_RS20345 (MML47_20345) - 4462122..4462400 (+) 279 WP_014504991.1 accessory factor UbiK family protein -
  MML47_RS20350 (MML47_20350) comM 4462417..4463937 (+) 1521 WP_241442335.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MML47_RS20360 (MML47_20360) - 4464412..4464921 (+) 510 WP_241442336.1 lipocalin family protein -
  MML47_RS20365 (MML47_20365) - 4465074..4465250 (-) 177 WP_010374782.1 hypothetical protein -
  MML47_RS20370 (MML47_20370) - 4465633..4467195 (+) 1563 WP_053503667.1 EAL domain-containing protein -
  MML47_RS20375 (MML47_20375) - 4467261..4468382 (-) 1122 WP_053503666.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54005.78 Da        Isoelectric Point: 8.2767

>NTDB_id=661197 MML47_RS20350 WP_241442335.1 4462417..4463937(+) (comM) [Xanthomonas oryzae strain NJ01]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQMVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRHALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRVSGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRCRVVAARQRQLARGALPNAQLDQPDTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALSAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=661197 MML47_RS20350 WP_241442335.1 4462417..4463937(+) (comM) [Xanthomonas oryzae strain NJ01]
ATGAGTCTGGCGTTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCCGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTCCCCTCCACCCAGATGGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTACGTGCCGCGCTGC
TGTGCGCGCAGTTCGAATTCCCCGCACGGCGCATTACCATCAATCTGGCGCCGGCCGATCTGCCTAAGGAAGGCGGACGG
TTCGATTTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAAATCGACCGCCATGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGCATCGATGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCAGGGC
GACGGCTGATCGTACCGCTTGCCAACGGTGCCGAAGCGGCGATTGCCGGGCACGTCGAAGCCTTCACCGCACGCACGCTG
CTTGAGGTGTGCGCGACGCTCAACGGCAGCCAGAAAGCACCTGCAGCCGAATTGGCGGTGCAGGCGCTCGGCGCCCGTGC
CCTGCCCGACATGGCCGATGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCATCATC
TCCTTCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGTTGGCCTCGCGCCTGCCTGGGCTATTGCCCGAAGCCAGCGAA
GCCGAAGCGCTGGAAACCGCGGCCATTACCTCCATCAGCGGCCGCGGACTGGATCTGGCCCGCTGGCGGCAGCGGCCCTA
CCGGGCTCCTCACCACACCGCCAGCGCAGTCGCCTTGGTTGGCGGTGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGG
CCCACAACGGTGTCTTGTTTCTGGACGAGTTGCCCGAGTGGCAACGGCAGACACTCGAGGTGCTGCGCGAGCCGTTGGAA
TCGGGCCTGGTCACGATCTCACGCGCGGCGCGCAGCGTCGACTTCCCTGCACGCTTCCAGCTGGTCGCTGCGATGAACCC
ATGCCCATGCGGTTGGGCAGGCGACGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGTATCCGCCGCTATCGCAGCCGTG
TCTCCGGCCCGTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTACCACCGCAAGCGCTGCGTAGCGGCAAC
CTCGGCGAGGACAGCGCCAGCGTGCGTTGCCGCGTGGTCGCCGCGCGGCAACGCCAGCTTGCGCGCGGAGCGCTGCCCAA
TGCGCAACTGGATCAGCCCGACACCGACCGCCATTGCCGTCTGCAGCACGACGACCAAGTGCTGCTCGAGCGCGCCATCG
AACACCTGCAGCTGTCTGCGCGCTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCG
GACATCGCCACGCGCCATCTCACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCACTGAGTGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.719

100

0.567
  comM Haemophilus influenzae Rd KW20

55.186

100

0.557
  comM Glaesserella parasuis strain SC1401

54.241

100

0.543
  comM Vibrio campbellii strain DS40M4

54.15

100

0.542
  comM Legionella pneumophila str. Paris

52.113

98.221

0.512
  comM Legionella pneumophila strain ERS1305867

52.113

98.221

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.063

100

0.462