Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MME58_RS00630 Genome accession   NZ_CP092923
Coordinates   141353..142846 (+) Length   497 a.a.
NCBI ID   WP_055005632.1    Uniprot ID   A0A0Q0B8U3
Organism   Pseudomonas syringae pv. tagetis strain ICMP 4091     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 136353..147846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MME58_RS00620 (MME58_00620) - 136813..137556 (-) 744 WP_082427066.1 permease -
  MME58_RS00625 (MME58_00625) - 137560..140946 (-) 3387 Protein_123 toxin VasX -
  MME58_RS00630 (MME58_00630) comM 141353..142846 (+) 1494 WP_055005632.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MME58_RS00635 (MME58_00635) - 143023..143886 (+) 864 WP_055005631.1 type III effector -
  MME58_RS27640 - 143901..144005 (+) 105 Protein_126 Mg chelatase-like protein -
  MME58_RS00640 (MME58_00640) - 144077..145384 (-) 1308 WP_054984673.1 CitMHS family transporter -
  MME58_RS00645 (MME58_00645) - 145682..146083 (+) 402 WP_054984674.1 GFA family protein -
  MME58_RS00650 (MME58_00650) - 146126..147523 (-) 1398 WP_054984675.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53096.94 Da        Isoelectric Point: 7.7173

>NTDB_id=661142 MME58_RS00630 WP_055005632.1 141353..142846(+) (comM) [Pseudomonas syringae pv. tagetis strain ICMP 4091]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPALTLVGLPEGAVKESKDRVRSAILNSGLDFPARRITLNLAPADLPKDGGR
FDLAIALGLLAASGQVPLVALQDVECLGELALSGAIRPIQGVLPAALAARAAERTLIIPAVNAEEACLASGLRVIAVNHL
LELVAHFNGRTVIAPYQSSGLLHQPKPYPDLSEVQGQTAAKRALVIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVASQVPLTSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPTGRCRCSTEQVQRYRNKLSGPLLDRIDLHLTVAREATALNPDPTT
SENTASAAAVVAQARERQQRRQGCANAFLDLPALREHCALSSIDERWLETACERLTLSLRSAHRLLKVARTLADLEQVDA
ISRSHLAEALQYRPSSN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=661142 MME58_RS00630 WP_055005632.1 141353..142846(+) (comM) [Pseudomonas syringae pv. tagetis strain ICMP 4091]
ATGTCGCTGGCCATCGTTCATAGTCGTGCCCAGGTCGGGGTGGAGGCCCCGGCGGTTACTGTTGAAGCGCATCTGGCAAA
CGGCCTGCCGGCCCTGACGCTGGTGGGATTGCCGGAAGGGGCGGTCAAGGAGAGCAAGGATCGGGTGCGCAGTGCCATTC
TCAATTCCGGGCTGGATTTTCCGGCGCGGCGGATCACGCTCAACCTTGCACCGGCTGATTTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGTTTGCTGGCCGCCAGCGGGCAGGTGCCGCTGGTTGCGTTGCAGGATGTTGAGTGCTT
GGGCGAGCTGGCGTTGTCGGGAGCGATTCGGCCGATTCAGGGTGTGCTGCCTGCTGCGCTGGCGGCGCGTGCGGCGGAGC
GGACGCTGATCATTCCGGCGGTGAACGCAGAGGAAGCTTGTTTGGCATCGGGGTTGCGGGTGATCGCGGTGAATCACTTG
CTCGAGCTGGTCGCGCATTTCAACGGGCGCACGGTGATTGCGCCGTATCAGTCCAGCGGTCTGCTGCATCAGCCCAAGCC
TTATCCGGACCTCAGTGAGGTGCAGGGCCAGACCGCCGCAAAGCGTGCGCTGGTGATTGCCGCTGCCGGGGCGCATAACC
TGTTGTTCAGCGGGCCGCCCGGCACCGGCAAGACGCTGCTCGCCAGCCGCCTGCCGGGTTTGTTGCCGCCGCTGGACGAG
CATGAAGCGCTGGAGGTGGCGGCGATTCAGTCGGTCGCCAGTCAGGTGCCGCTGACCAGTTGGCCGCAGCGGCCGTTTCG
ACAACCGCATCACTCGGCGTCCGGACCTGCGTTGGTGGGCGGCGGCAGTCGTCCGCAACCTGGCGAAATCACCTTGGCTC
ATCATGGCGTTCTATTCCTTGATGAGCTGCCGGAGTTTGATCGTCGCGTGCTGGAGGTTCTACGTGAACCGCTGGAGTCG
GGGCATATTGTGATTTCCCGGGCGCGGGATCGCGTGCGTTTTCCGGCACGCTTCCAGTTGGTGGCGGCGATGAACCCTTG
CCCCTGTGGATATCTCGGTGAGCCCACCGGGCGCTGCCGTTGTTCCACCGAGCAGGTGCAGCGCTATCGCAACAAGCTGT
CCGGTCCGCTGCTGGACCGGATTGATCTGCACCTGACCGTCGCCCGCGAAGCCACTGCCCTCAACCCCGATCCGACCACC
AGTGAAAACACCGCAAGCGCGGCAGCGGTGGTTGCGCAGGCCAGAGAGCGTCAGCAACGCCGTCAGGGCTGCGCCAATGC
CTTTCTCGACCTGCCGGCGCTGCGCGAACACTGCGCGCTGTCCAGTATCGATGAGCGCTGGCTGGAGACGGCCTGCGAGC
GTCTGACCCTCTCGTTACGTTCGGCGCATCGACTGCTGAAAGTGGCACGGACGCTGGCGGATCTGGAACAGGTGGATGCG
ATCAGCCGCAGTCATCTGGCTGAGGCTCTGCAGTATCGGCCTTCAAGTAACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0B8U3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Glaesserella parasuis strain SC1401

53.4

100

0.537
  comM Vibrio campbellii strain DS40M4

53.939

99.598

0.537
  comM Haemophilus influenzae Rd KW20

53.2

100

0.535
  comM Legionella pneumophila str. Paris

49.109

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.109

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.459