Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MME54_RS00615 Genome accession   NZ_CP092918
Coordinates   138666..140159 (+) Length   497 a.a.
NCBI ID   WP_054984671.1    Uniprot ID   A0A0N8RPL4
Organism   Pseudomonas syringae pv. helianthi strain LMG 5067     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 133666..145159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MME54_RS00605 (MME54_00605) - 134123..134866 (-) 744 WP_082441148.1 permease -
  MME54_RS00610 (MME54_00610) - 134870..138259 (-) 3390 WP_241409746.1 toxin VasX -
  MME54_RS00615 (MME54_00615) comM 138666..140159 (+) 1494 WP_054984671.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MME54_RS00620 (MME54_00620) - 140336..141199 (+) 864 WP_054984672.1 type III effector -
  MME54_RS00625 (MME54_00625) - 141391..142698 (-) 1308 WP_054984673.1 CitMHS family transporter -
  MME54_RS00630 (MME54_00630) - 142996..143397 (+) 402 WP_054984674.1 GFA family protein -
  MME54_RS00635 (MME54_00635) - 143440..144837 (-) 1398 WP_054984675.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53154.98 Da        Isoelectric Point: 7.5254

>NTDB_id=661111 MME54_RS00615 WP_054984671.1 138666..140159(+) (comM) [Pseudomonas syringae pv. helianthi strain LMG 5067]
MSLAIVHSRAQVGVEAPEVTVEAHLANGLPALTLVGLPEGAVKESKDRVRSAILNSGLDFPARRITLNLAPADLPKDGGR
FDLAIALGLLAASGQVPLVALQDVECLGELALSGAIRPIQGVLPAALAARAAERTLIIPAVNAEEACLASGLRVIAVNHL
LELVAHFNGRTVIAPYQSSGLLHQPKPYPDLSEVQGQTAAKRALVIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVASQVPLTSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPTGRCRCSTEQVQRYRNKLSGPLLDRIDLHLTVAREATALNPDPTT
SENTASAAAVVAQARERQQRRQGCANAFLDLPALREHCALSSIDERWLETACERLTLSLRSAHRLLKVARTLADLEQVDA
ISRSHLAEALQYRPSSN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=661111 MME54_RS00615 WP_054984671.1 138666..140159(+) (comM) [Pseudomonas syringae pv. helianthi strain LMG 5067]
ATGTCGCTGGCCATCGTTCATAGTCGTGCCCAGGTCGGGGTGGAAGCCCCTGAGGTTACTGTTGAAGCGCATCTGGCCAA
CGGCCTGCCGGCCCTGACGCTGGTGGGGTTGCCGGAGGGGGCGGTCAAGGAGAGCAAGGACCGGGTGCGCAGTGCCATTC
TCAATTCCGGGCTGGATTTTCCGGCGCGGCGGATCACGCTCAACCTTGCACCGGCTGATTTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGTTTGCTGGCCGCCAGCGGGCAGGTGCCGCTGGTTGCGTTGCAGGATGTTGAGTGCTT
GGGCGAGCTGGCGTTGTCGGGAGCGATTCGGCCGATTCAGGGTGTGCTGCCTGCTGCGCTGGCGGCGCGTGCGGCGGAGC
GGACGCTGATCATTCCAGCGGTGAACGCAGAGGAAGCTTGTTTGGCATCGGGGTTGCGGGTGATCGCGGTGAATCACTTG
CTCGAGCTGGTCGCGCATTTCAACGGGCGCACGGTGATTGCGCCGTATCAGTCCAGCGGTCTGCTGCATCAGCCCAAGCC
TTATCCGGACCTCAGTGAGGTGCAGGGCCAGACCGCCGCAAAGCGTGCGCTGGTGATTGCCGCTGCCGGGGCGCATAACC
TGTTGTTCAGCGGGCCGCCCGGCACCGGCAAGACGCTGCTCGCCAGCCGCCTGCCGGGTTTGTTGCCGCCGCTGGACGAG
CATGAAGCGCTGGAGGTGGCGGCGATTCAGTCGGTCGCCAGTCAGGTGCCGCTGACCAGTTGGCCGCAGCGGCCGTTTCG
ACAACCGCATCACTCGGCGTCCGGACCTGCGTTGGTGGGCGGCGGCAGTCGTCCGCAACCTGGCGAAATCACCTTGGCTC
ATCATGGCGTTCTATTCCTTGATGAGCTGCCGGAGTTTGATCGCCGCGTTCTGGAGGTTCTACGCGAACCGCTGGAGTCG
GGGCATATCGTGATTTCCCGGGCGCGGGATCGCGTGCGTTTTCCGGCACGCTTCCAGTTGGTGGCGGCGATGAACCCTTG
CCCCTGTGGATATCTCGGTGAGCCCACCGGGCGCTGCCGTTGTTCCACCGAGCAGGTGCAGCGCTATCGCAACAAGCTGT
CCGGTCCGCTGCTGGACCGGATTGATCTGCACCTGACCGTCGCCCGCGAAGCCACTGCCCTCAACCCCGATCCGACCACC
AGTGAAAACACCGCAAGCGCGGCAGCGGTGGTTGCGCAGGCCAGAGAGCGTCAGCAACGCCGTCAGGGCTGCGCCAATGC
CTTTCTCGACCTGCCGGCGCTGCGCGAACACTGCGCGCTGTCCAGTATCGATGAGCGCTGGCTGGAGACGGCCTGCGAGC
GTCTGACCCTCTCGTTACGTTCGGCGCATCGACTGCTGAAAGTGGCACGGACGCTGGCGGATCTGGAACAGGTGGATGCG
ATCAGCCGCAGTCATCTGGCTGAGGCTCTGCAGTACCGGCCTTCGAGTAACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N8RPL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Glaesserella parasuis strain SC1401

53.4

100

0.537
  comM Vibrio campbellii strain DS40M4

53.939

99.598

0.537
  comM Haemophilus influenzae Rd KW20

53.2

100

0.535
  comM Legionella pneumophila str. Paris

49.109

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.109

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.459