Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MKW86_RS00565 Genome accession   NZ_CP092906
Coordinates   124452..125966 (-) Length   504 a.a.
NCBI ID   WP_241417103.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain LP0103     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 119452..130966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKW86_RS00535 (MKW86_00535) pncB 119497..120675 (-) 1179 WP_011707868.1 nicotinate phosphoribosyltransferase -
  MKW86_RS00540 (MKW86_00540) - 120777..121412 (-) 636 WP_241417099.1 nicotinamidase -
  MKW86_RS00545 (MKW86_00545) - 121488..122138 (+) 651 WP_011707866.1 DNA mismatch repair protein MutT -
  MKW86_RS00550 (MKW86_00550) - 122135..122521 (+) 387 WP_241417100.1 DUF523 domain-containing protein -
  MKW86_RS00555 (MKW86_00555) - 122467..123423 (-) 957 WP_241417101.1 acyltransferase -
  MKW86_RS00560 (MKW86_00560) - 123417..124331 (-) 915 WP_241417102.1 acyltransferase -
  MKW86_RS00565 (MKW86_00565) comM 124452..125966 (-) 1515 WP_241417103.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MKW86_RS00570 (MKW86_00570) ilvG 126350..127996 (+) 1647 WP_241417104.1 acetolactate synthase 2 catalytic subunit -
  MKW86_RS00575 (MKW86_00575) ilvM 127993..128244 (+) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  MKW86_RS00580 (MKW86_00580) - 128257..129201 (+) 945 WP_241417105.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54671.59 Da        Isoelectric Point: 7.4330

>NTDB_id=661019 MKW86_RS00565 WP_241417103.1 124452..125966(-) (comM) [Aeromonas hydrophila strain LP0103]
MSLAVVYSRASLGVAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQTTEALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRERVLGARERMLSRNGKLNNLLDSREIEEVCCLSQQNAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRQAI
EKEHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=661019 MKW86_RS00565 WP_241417103.1 124452..125966(-) (comM) [Aeromonas hydrophila strain LP0103]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCTTAGGTGTCGCGGCCCCGCAAGTGACGGTGGAGGTGCACCTCTCCAA
CGGTTTGCCCGCCTTCAACATGGTGGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGCGAATTGGCCCTGACCGGCGAGATCCGTCCCGTGCTCGGAGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCGGGTC
GCACCCTGCTGGTACCGCGAGAAAACGGCCCCGAGGCCTCGCTGATCCAGGATGCCGAAGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCACTGCCGGATCCCCAGACCACGGAGGCCCTGCCCGATGT
GCCGGACCTGCAGGACGTGATCGGCCAGTCTCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCTTGCCCGGTATCTTGCCGCCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGGGCCGGTCACTGGCATCACAGACCCTACCG
TACGCCGCACCACAGCGCCTCGGCCGTGGCGCTGGTGGGCGGCGGCAGCCACCCGAGGCCCGGTGAAATATCCCTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAACTGCCCGAGTTCGAACGCAAAGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACC
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCTTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGACCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAAGGCAGCCTGACCGGCAAGGCGGAGCGGGGA
GAGTCGAGCCAGCAGATCCGCGAACGGGTGCTGGGGGCACGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAATAACCT
GCTTGATAGCCGTGAAATCGAAGAAGTTTGCTGCTTATCGCAGCAGAATGCCGAGTTTCTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTGTCGCGCACCATAGCCGATCTGGCAGGACGGCAGGCCATC
GAGAAGGAGCACCTGATCGAGGCGCTCGGCTACCGGGCTATGGATCGGCTGCTGTCGCGACTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Vibrio campbellii strain DS40M4

62.351

99.603

0.621
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Glaesserella parasuis strain SC1401

60.158

100

0.605
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.64

100

0.468