Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MJ905_RS15105 Genome accession   NZ_CP092828
Coordinates   3202680..3204200 (-) Length   506 a.a.
NCBI ID   WP_032693771.1    Uniprot ID   A0AAN0ZXK2
Organism   Klebsiella michiganensis strain HOBD-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3197680..3209200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ905_RS15095 (MJ905_15090) hdfR 3201378..3202199 (-) 822 WP_004097454.1 HTH-type transcriptional regulator HdfR -
  MJ905_RS15100 (MJ905_15095) - 3202318..3202656 (+) 339 WP_004097464.1 DUF413 domain-containing protein -
  MJ905_RS15105 (MJ905_15100) comM 3202680..3204200 (-) 1521 WP_032693771.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MJ905_RS15110 (MJ905_15105) ilvL 3204551..3204649 (+) 99 WP_001311244.1 ilv operon leader peptide -
  MJ905_RS15115 (MJ905_15110) ilvG 3204789..3206435 (+) 1647 WP_014227445.1 acetolactate synthase 2 catalytic subunit -
  MJ905_RS15120 (MJ905_15115) ilvM 3206432..3206689 (+) 258 WP_014837061.1 acetolactate synthase 2 small subunit -
  MJ905_RS15125 (MJ905_15120) - 3206706..3207635 (+) 930 WP_014227446.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55211.68 Da        Isoelectric Point: 8.3570

>NTDB_id=660558 MJ905_RS15105 WP_032693771.1 3202680..3204200(-) (comM) [Klebsiella michiganensis strain HOBD-7]
MSLAIVYTRAALGIGAPLITVEVHISNGLPGLTMVGLPETTVREARDRVRSAIINSGYAYPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLKAPRLNQYEFVGELALTGALRGVPGAISSAMEAIKAGRKIVISNENSPEVGLIGGSDCLIATDL
QEVCAFLEGRHALANPLPEGEYTDETSVDLRDVIGQRQGKRALEIIAAGGHNLLMIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLVDSRHAMKNWRRRPFRAPHHSSSLAAMVGGGSIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GVIHISRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGVLSQGTNEE
ESSACVRQRVLAARERQLSRQKKLNAHLGNDEMKICCRLHKDDAVWLEQTLIQLGLSIRAWQRLIKVSRTIADIEAVERI
ERHHLQEALGYRAIDRMLSHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=660558 MJ905_RS15105 WP_032693771.1 3202680..3204200(-) (comM) [Klebsiella michiganensis strain HOBD-7]
ATGTCACTCGCCATTGTTTACACCCGCGCCGCTCTCGGGATCGGTGCCCCGCTTATCACGGTTGAAGTTCATATCAGCAA
CGGGCTCCCAGGCCTGACAATGGTAGGACTGCCTGAAACAACGGTTAGAGAAGCGCGTGACCGGGTACGTAGTGCGATTA
TCAACAGCGGCTACGCTTATCCGGCGAAAAAAATCACCATCAATCTGGCCCCGGCCGATCTGCCAAAAGAAGGGGGAAGA
TATGATTTACCTATCGCTCTCGCGCTTCTGGTGGCCTCAGAGCAGCTAAAGGCCCCCAGGCTAAATCAATATGAGTTTGT
CGGCGAGCTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCTGGGGCCATATCCAGCGCCATGGAGGCCATAAAAGCGGGGC
GGAAGATTGTTATCTCTAATGAGAATTCTCCAGAGGTGGGGTTAATCGGCGGCAGTGACTGCCTTATCGCCACCGATCTC
CAGGAAGTCTGCGCTTTTCTCGAAGGTCGACATGCCCTGGCTAACCCCCTTCCAGAAGGGGAATATACGGATGAAACATC
GGTTGATCTGCGTGATGTTATTGGCCAACGGCAGGGGAAACGAGCGCTGGAAATCATCGCTGCAGGTGGTCACAACCTGC
TGATGATAGGCCCGCCCGGCACAGGAAAAACGATGCTCGCCAGTCGATTACCGGGACTACTGCCGCCGCTGAGTAATCAG
GAAGCGCTGGAAAGCGCGGCAATACTTAGCCTGGTCGATTCCAGGCATGCCATGAAAAATTGGCGCCGCAGGCCCTTTCG
TGCCCCGCATCATAGCTCCTCCCTGGCGGCCATGGTGGGCGGAGGCTCAATTCCGGCACCGGGAGAGATCTCCCTTGCCC
ATAACGGAGTCCTGTTCCTGGATGAGCTGCCTGAATTCGAACGCAGGGTGCTGGATGCGTTACGCGAACCCATTGAGTCA
GGGGTTATCCATATCTCACGCACGCGCGCCAAAATCGATTATCCAGCCCGTTTCCAGCTTATTGCAGCAATGAATCCCAG
CCCGACAGGGCACTATCAGGGCCAGCATAATCGCGCTTCACCTGAACAGACGCTACGCTACCTGGGTCGTTTATCCGGCC
CGTTTCTTGACCGATTCGATCTCTCCCTGGAGATCCCACTTCCGCCGCCGGGGGTGCTCAGCCAGGGAACAAACGAAGAG
GAAAGTAGCGCCTGCGTACGCCAACGTGTTCTGGCCGCACGCGAAAGGCAGCTATCGCGGCAGAAAAAACTTAACGCGCA
TCTGGGAAATGATGAGATGAAAATCTGCTGCCGGCTTCATAAAGATGATGCTGTCTGGCTGGAGCAGACGCTAATACAGC
TCGGGCTTTCAATCCGCGCCTGGCAGCGCCTGATTAAAGTGTCCCGAACTATTGCCGATATTGAGGCTGTCGAACGCATC
GAACGCCATCATTTACAGGAGGCTCTCGGCTATCGGGCAATAGACAGAATGTTGAGCCATCTACAAAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.841

99.407

0.595
  comM Haemophilus influenzae Rd KW20

58.708

100

0.593
  comM Vibrio campbellii strain DS40M4

59.562

99.209

0.591
  comM Glaesserella parasuis strain SC1401

58.777

100

0.589
  comM Legionella pneumophila str. Paris

47.984

98.024

0.47
  comM Legionella pneumophila strain ERS1305867

47.984

98.024

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.495

100

0.443