Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MKK04_RS25600 Genome accession   NZ_CP092827
Coordinates   5556288..5557778 (+) Length   496 a.a.
NCBI ID   WP_063912194.1    Uniprot ID   -
Organism   Pseudomonas sp. LS.1a     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5551288..5562778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKK04_RS25570 (MKK04_25570) - 5551746..5552441 (+) 696 WP_207837582.1 HAD family hydrolase -
  MKK04_RS25575 (MKK04_25575) sutA 5552622..5552951 (-) 330 WP_063912190.1 transcriptional regulator SutA -
  MKK04_RS25580 (MKK04_25580) - 5553382..5554713 (-) 1332 WP_207837580.1 ammonium transporter -
  MKK04_RS25585 (MKK04_25585) glnK 5554760..5555098 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  MKK04_RS25590 (MKK04_25590) - 5555504..5555770 (+) 267 WP_207837577.1 accessory factor UbiK family protein -
  MKK04_RS25595 (MKK04_25595) - 5555771..5556124 (+) 354 WP_241106086.1 gamma-glutamylcyclotransferase family protein -
  MKK04_RS25600 (MKK04_25600) comM 5556288..5557778 (+) 1491 WP_063912194.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MKK04_RS25605 (MKK04_25605) - 5557955..5558323 (-) 369 WP_207837528.1 response regulator -
  MKK04_RS25610 (MKK04_25610) - 5558320..5559312 (-) 993 WP_233687594.1 response regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52766.39 Da        Isoelectric Point: 7.5394

>NTDB_id=660537 MKK04_RS25600 WP_063912194.1 5556288..5557778(+) (comM) [Pseudomonas sp. LS.1a]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPTATLAEVECLGELALSGNLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAAKVAEAREVQQRRQGCANAFLDLEGLRRHCGLAAADQAWLEGACERLSLSLRAAHRLLKVARTLADLEGSQAI
GRAHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=660537 MKK04_RS25600 WP_063912194.1 5556288..5557778(+) (comM) [Pseudomonas sp. LS.1a]
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTGGGCGTGCAGGCACCAGCCGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCCCATCTCACCCTGGTCGGCCTGCCGGAAACCACGGTCAAAGAGAGCAAGGACCGGGTACGCAGCGCCATCG
TCAACTCAGGCCTGAACTACCCGCAGCGGCGCATCACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGGCGC
TATGACCTGGCCATTGCCCTGGGCATTCTCGCCGCCGATGGCCAGGTGCCAACGGCCACCCTTGCCGAAGTCGAATGCCT
GGGTGAACTGGCGCTGTCTGGCAACTTGCGCCCGGTGCAGGGCGTGTTGCCCGCGGCACTGGCGGCACGCGAAGCCGGCC
GGGCGCTGGTGGTGCCACGGGAGAACGCCGAGGAAGCCAGCCTGGCAGGCGGGCTGGTGGTGTATGCGGTGGGGCATCTG
CTGGAGCTGGTCGCCCATCTGAACGGCCAGGTGCCGTTGCCGCCGTATGCCGCCAACGGGCTGATCCTGCAGCAACGCCC
GTACCCGGACCTGAGCGAGGTGCAGGGCCAACTGGCAGCCAAGCGCGCACTGCTGCTAGCGGCGGCCGGGGCGCACAACC
TGCTGTTCACCGGGCCTCCCGGTACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCGGGGCTGCTGCCACCGCTGGACGAG
CACGAAGCACTGGAAGTGGCGGCGATCCAGTCGGTCAGCGGCCATACGCCACTGAGCAGTTGGCCGCAGCGGCCCTTTCG
CCATCCGCACCACTCCGCTTCCGGCCCGGCGCTGGTCGGCGGCAGCAGCCGGCCGCAACCGGGCGAAATCACCCTCGCCC
ACCATGGGGTGCTGTTCCTGGATGAACTGCCGGAATTCGAGCGGCGGGTGCTGGAAGTGTTGCGTGAGCCGTTGGAGTCG
GGCGAGATCGTGATTGCCCGGGCCCGCGACAAGGTGCGTTTCCCCGCACGTTTCCAACTGGTGGCGGCAATGAACCCCTG
CCCTTGTGGCTACCTGGGCGACCCTACCGGCCGCTGCCGCTGCAGCACCGAGCAGATCGCGCGGTATCGCAACAAGCTGT
CCGGGCCGCTGCTGGACCGTATCGACCTGCACCTGACCGTGGCCCGGGAGAGCACCACGCTGAACAACCAGCCCTGCGGC
GAGACCAGTGCCGATGTCGCGGCCAAGGTGGCCGAAGCGCGCGAAGTGCAACAGCGGCGGCAGGGGTGTGCGAATGCGTT
TCTCGACCTTGAGGGATTGCGCCGCCATTGTGGGTTGGCGGCGGCGGACCAGGCTTGGCTGGAGGGGGCCTGTGAGCGGC
TGTCCCTGTCGTTGCGCGCGGCACACCGGTTGCTGAAGGTGGCGCGAACGCTGGCGGATCTGGAGGGTAGCCAGGCAATT
GGCCGGGCGCATCTTGCCGAGGCGCTGCAGTACCGGCCAGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.6

100

0.56
  comM Vibrio campbellii strain DS40M4

55.758

99.798

0.556
  comM Vibrio cholerae strain A1552

55.152

99.798

0.55
  comM Glaesserella parasuis strain SC1401

53.693

100

0.542
  comM Legionella pneumophila str. Paris

49.395

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.395

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.474