Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AVAEIV_RS24075 Genome accession   NZ_CP092752
Coordinates   5121562..5123058 (+) Length   498 a.a.
NCBI ID   WP_061288947.1    Uniprot ID   -
Organism   Azotobacter vinelandii strain AEIV     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5116562..5128058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVAEIV_RS24040 (AVAEIV_004780) - 5116600..5117301 (+) 702 WP_302227600.1 HAD family hydrolase -
  AVAEIV_RS24045 (AVAEIV_004781) - 5117308..5118114 (+) 807 WP_302227601.1 CPBP family intramembrane glutamic endopeptidase -
  AVAEIV_RS24050 (AVAEIV_004782) sutA 5118181..5118501 (-) 321 WP_012703242.1 transcriptional regulator SutA -
  AVAEIV_RS24055 (AVAEIV_004783) - 5118626..5119051 (-) 426 WP_012703243.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AVAEIV_RS24060 (AVAEIV_004784) - 5119202..5120518 (-) 1317 WP_012703244.1 ammonium transporter -
  AVAEIV_RS24065 (AVAEIV_004785) glnK 5120552..5120890 (-) 339 WP_012703245.1 P-II family nitrogen regulator -
  AVAEIV_RS24070 (AVAEIV_004786) - 5121255..5121530 (+) 276 WP_302227602.1 accessory factor UbiK family protein -
  AVAEIV_RS24075 (AVAEIV_004787) comM 5121562..5123058 (+) 1497 WP_061288947.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AVAEIV_RS24080 (AVAEIV_004788) - 5123132..5124319 (+) 1188 WP_302227603.1 AAA family ATPase -
  AVAEIV_RS24085 (AVAEIV_004789) - 5124316..5125197 (-) 882 WP_302227604.1 LysR family transcriptional regulator -
  AVAEIV_RS24090 (AVAEIV_004790) - 5125312..5125734 (+) 423 WP_012703250.1 DoxX family protein -
  AVAEIV_RS24095 (AVAEIV_004791) - 5125785..5126513 (+) 729 WP_012703251.1 pirin family protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52266.22 Da        Isoelectric Point: 8.1441

>NTDB_id=660086 AVAEIV_RS24075 WP_061288947.1 5121562..5123058(+) (comM) [Azotobacter vinelandii strain AEIV]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPALTLVGLPETAVRESKDRVRSAILTSGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASEQLPAGSLDGLECLGELALSGGLRPVRGVLPAALAARAAGRTLVVPRANAEEASLASGLNVLAIDHL
LELAAHLNGRTPLAPYRSSGLLRQTLPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIHSVAGSAPLAAWPQRPFRQPHHSASGPALVGGGSRPRPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GEIVIARASDKVRFPARFQLVAAMNPCPCGYLGDPAGRCRCTPEQIQRYRAKLSGPLLDRIDLHIGVAREATALGAPRLD
GPDSAGAAAQVAAARNLQLARQGCPNAFLDLPGLHQHCALSDEDRQWLERACERLGLSLRAAHRVLKVARTLADLEALPG
IARAHLAEALQYRPAAHA

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=660086 AVAEIV_RS24075 WP_061288947.1 5121562..5123058(+) (comM) [Azotobacter vinelandii strain AEIV]
ATGTCCCTGGCCATCGTCCACAGCCGCGCCCAGGTGGGCGTCGAGGCGCCCGCCGTCACCGTGGAGGCGCACCTGGCCAA
CGGCCTGCCGGCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCCGCGAGAGCAAGGACCGCGTGCGCAGCGCCATCC
TCACCTCCGGCTTCGATTTTCCGGCACGGCGTATCACCCTCAACCTGGCGCCCGCCGACCTGCCCAAGGACGGCGGACGC
TTCGACCTGGCCATCGCCCTCGGCATCCTCGCCGCCAGCGAGCAATTGCCCGCGGGGTCGCTGGACGGCCTGGAATGCCT
GGGCGAACTGGCCCTCTCCGGCGGCCTGCGCCCGGTCCGGGGCGTGCTGCCCGCCGCGCTGGCCGCGCGCGCCGCCGGAC
GCACCCTGGTGGTGCCGCGGGCGAACGCCGAAGAGGCCAGCCTGGCGTCGGGCCTGAACGTGCTGGCGATCGACCACCTG
CTGGAACTGGCCGCCCACCTGAACGGCCGGACCCCGCTCGCGCCCTACCGGTCCAGCGGCCTGCTGCGACAGACGCTTCC
CTACCCCGACCTCGCCGAGGTGCAGGGCCAGGCTGCGGCCAAGCGCGCCCTGCTGGTGGCGGCGGCAGGAGCCCACAACC
TCCTGTTGAGCGGGCCGCCCGGAACCGGCAAGACCTTGCTGGCCAGCCGCCTGCCGGGCCTGCTGCCGCCTTTGGACGAA
CGCGAGGCGCTGGAGGTGGCGGCGATCCATTCGGTGGCCGGCAGCGCGCCACTCGCCGCCTGGCCGCAGCGGCCGTTCCG
CCAGCCCCATCACAGCGCCTCGGGACCGGCGCTGGTCGGCGGCGGCAGCCGGCCGCGCCCCGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTTCTCGACGAATTGCCCGAATTCGACCGCAAGGTGCTGGAAGTGCTGCGCGAGCCCCTGGAAAGC
GGCGAAATCGTCATCGCCCGGGCCAGCGACAAGGTGCGCTTTCCGGCGCGTTTCCAGTTGGTGGCGGCGATGAACCCCTG
TCCCTGCGGCTATCTGGGCGACCCCGCCGGCCGCTGTCGCTGCACCCCGGAGCAGATCCAGCGTTACCGCGCCAAGCTGT
CCGGCCCGCTGCTCGACCGCATCGACCTGCACATCGGCGTCGCCCGCGAGGCCACCGCCCTGGGCGCGCCGCGCCTGGAC
GGCCCGGACAGCGCCGGCGCCGCCGCCCAGGTGGCGGCGGCGCGCAACCTGCAACTCGCCCGCCAGGGCTGCCCCAATGC
CTTCCTCGACCTGCCCGGTCTGCACCAGCACTGTGCACTGAGCGACGAAGACCGCCAGTGGCTGGAGCGCGCCTGCGAAC
GCCTCGGCCTGTCGTTGCGCGCCGCCCACCGCGTCCTCAAGGTGGCACGCACCCTGGCCGATCTGGAGGCGCTGCCGGGC
ATCGCCCGCGCCCACCTGGCCGAAGCGCTGCAATACCGGCCGGCGGCGCATGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.539

99.799

0.564
  comM Vibrio cholerae strain A1552

56.338

99.799

0.562
  comM Haemophilus influenzae Rd KW20

54.91

100

0.55
  comM Glaesserella parasuis strain SC1401

54.309

100

0.544
  comM Legionella pneumophila str. Paris

50.099

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.099

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.458