Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   MK801_RS00790 Genome accession   NZ_CP092748
Coordinates   164695..165111 (+) Length   138 a.a.
NCBI ID   WP_240664867.1    Uniprot ID   -
Organism   Lactococcus lactis strain 17M1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 159695..170111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK801_RS00770 (MK801_00770) - 161807..162148 (+) 342 WP_240664866.1 hypothetical protein -
  MK801_RS00775 (MK801_00775) comGA 162418..163356 (+) 939 Protein_135 competence type IV pilus ATPase ComGA -
  MK801_RS00780 (MK801_00780) comGB 163250..164323 (+) 1074 WP_080619357.1 competence type IV pilus assembly protein ComGB Machinery gene
  MK801_RS00785 (MK801_00785) comGC 164337..164720 (+) 384 WP_080651958.1 competence type IV pilus major pilin ComGC Machinery gene
  MK801_RS00790 (MK801_00790) comGD 164695..165111 (+) 417 WP_240664867.1 competence type IV pilus minor pilin ComGD Machinery gene
  MK801_RS00795 (MK801_00795) comGE 165083..165379 (+) 297 WP_015427164.1 competence type IV pilus minor pilin ComGE Machinery gene
  MK801_RS00800 (MK801_00800) comGF 165342..165788 (+) 447 WP_057720549.1 competence type IV pilus minor pilin ComGF Machinery gene
  MK801_RS00805 (MK801_00805) comGG 165836..166111 (+) 276 WP_240758564.1 competence protein ComGG Machinery gene
  MK801_RS00810 (MK801_00810) - 166193..166630 (+) 438 WP_010906313.1 zinc-dependent MarR family transcriptional regulator -
  MK801_RS00815 (MK801_00815) - 166627..167469 (+) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  MK801_RS00820 (MK801_00820) - 167646..168383 (+) 738 WP_015427159.1 metal ABC transporter ATP-binding protein -
  MK801_RS00825 (MK801_00825) - 168376..169185 (+) 810 WP_014570791.1 metal ABC transporter permease -
  MK801_RS00830 (MK801_00830) - 169223..170089 (-) 867 WP_057720547.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15826.56 Da        Isoelectric Point: 7.9840

>NTDB_id=659950 MK801_RS00790 WP_240664867.1 164695..165111(+) (comGD) [Lactococcus lactis strain 17M1]
MKNEILMTRAFTLLESLLVLLIISFSATLFSLEIIQTVHLFKGELFVLQFENFYKRSQEDAALLQKSESLVAKNQELICE
DRSITIPKEVAVKDFTVKFDDKGENSSLQKLTISLPYEKKLITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 417 bp        

>NTDB_id=659950 MK801_RS00790 WP_240664867.1 164695..165111(+) (comGD) [Lactococcus lactis strain 17M1]
ATGAAGAACGAAATTTTAATGACTAGAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGATTATTTCTTTTAGCGC
AACTCTTTTTTCTTTAGAAATAATACAAACAGTCCATCTTTTTAAGGGAGAATTGTTTGTTCTTCAATTTGAAAATTTCT
ATAAAAGGAGTCAAGAAGATGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAAGAATTAATCTGTGAA
GATAGAAGTATCACAATTCCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTTGATGATAAGGGAGAGAATTCTAG
CTTACAAAAACTCACAATTTCTTTACCTTACGAAAAAAAGCTCATCACTTATCAATTGGAGATAGGCAGTGGAAAATTTA
AAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

65.942

100

0.659
  comYD Streptococcus gordonii str. Challis substr. CH1

39.695

94.928

0.377
  comYD Streptococcus mutans UA140

39.844

92.754

0.37
  comYD Streptococcus mutans UA159

39.844

92.754

0.37