Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MJ608_RS19350 Genome accession   NZ_CP092733
Coordinates   4162102..4163640 (+) Length   512 a.a.
NCBI ID   WP_256629542.1    Uniprot ID   -
Organism   Comamonas thiooxydans strain CHJ01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4157102..4168640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ608_RS19330 (MJ608_19300) - 4157830..4159158 (-) 1329 WP_034382803.1 sulfatase -
  MJ608_RS19335 (MJ608_19305) - 4159272..4160264 (-) 993 WP_034382804.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  MJ608_RS19340 (MJ608_19310) - 4160405..4161376 (-) 972 WP_034382806.1 tripartite tricarboxylate transporter substrate binding protein -
  MJ608_RS19345 (MJ608_19315) - 4161469..4162017 (+) 549 WP_039049409.1 MarR family winged helix-turn-helix transcriptional regulator -
  MJ608_RS19350 (MJ608_19320) comM 4162102..4163640 (+) 1539 WP_256629542.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MJ608_RS19355 (MJ608_19325) - 4163654..4164583 (-) 930 WP_256629544.1 LysR substrate-binding domain-containing protein -
  MJ608_RS19360 (MJ608_19330) - 4164695..4165873 (+) 1179 WP_256629546.1 YbfB/YjiJ family MFS transporter -
  MJ608_RS19365 (MJ608_19335) - 4165908..4166975 (+) 1068 WP_256629548.1 nitronate monooxygenase family protein -
  MJ608_RS19370 (MJ608_19340) - 4167026..4168306 (-) 1281 WP_256629549.1 CaiB/BaiF CoA-transferase family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54785.70 Da        Isoelectric Point: 7.3751

>NTDB_id=659917 MJ608_RS19350 WP_256629542.1 4162102..4163640(+) (comM) [Comamonas thiooxydans strain CHJ01]
MGLALVQSRALLGLQAPAVTVEVHLANGLPSFTLVGLADVEVKEARERVRAAIVNAGLEFPNNQRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDARRLADYEFAGELSLTGALRPVRGALATALALQRQQQRVRLVLPPDSALEAAFVPAIEVFGA
AHLLDVVRQFIAHDSTLSEHGDGVEGWQRVHSRPADASLPSLDLREVRGQMQAKRALEIAAAGAHGVLMIGPPGSGKSML
AQRFAGLLPGMTDEEALEAAAIASLSGRFTPQLWRQRPFAAPHHTASSIALVGGGSPPRPGEISYAHCGALFLDELPEFA
RSALEALREPLETGRITIVRAVQRAEFPARFQLVAAMNPCPCGFWGSRIRACRCSPDQVARYQARISGPLLDRIDLHVEV
AALSPEELLAAPEGESSAAVQQRVSAARDKALQRQGLPNHQLQGAQLDTHLQLEPEALTFAHKAAARLGWSARGTHRALK
VARTIADLADSDAITQTHLAEALQYRRALMQP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=659917 MJ608_RS19350 WP_256629542.1 4162102..4163640(+) (comM) [Comamonas thiooxydans strain CHJ01]
ATGGGTCTGGCACTGGTTCAAAGTCGTGCACTGCTGGGCTTGCAGGCACCGGCTGTCACGGTGGAGGTCCATCTGGCCAA
CGGACTGCCTTCGTTCACCCTGGTGGGTCTGGCGGATGTGGAGGTCAAGGAGGCCCGCGAGCGCGTGCGCGCAGCCATCG
TCAATGCAGGGCTGGAGTTCCCGAACAACCAGCGCATCACGGTCAATCTGGCTCCGGCGGATCTGCCCAAGGACTCAGGC
CGCTTTGACCTGCCGATAGCGCTGGGCATTCTGGCGGCCAGCGGGCAGATCGATGCACGGCGGCTCGCCGATTATGAGTT
TGCAGGAGAGCTGTCGCTGACCGGTGCCCTGCGCCCGGTACGCGGCGCCCTGGCTACTGCGCTGGCCCTGCAGCGTCAGC
AACAGCGCGTGCGGCTGGTGCTGCCGCCAGACAGTGCGCTGGAGGCCGCCTTTGTGCCGGCCATCGAAGTCTTCGGCGCC
GCGCATCTGCTGGATGTGGTCAGACAGTTCATCGCGCATGACAGCACCCTGTCGGAGCATGGCGATGGCGTGGAGGGCTG
GCAGCGGGTGCACTCCAGACCTGCTGACGCCTCTTTGCCGTCGCTGGATCTGCGCGAGGTGCGCGGCCAGATGCAGGCCA
AGCGCGCGCTTGAAATTGCAGCTGCCGGCGCGCATGGTGTGCTGATGATCGGCCCTCCGGGCTCGGGGAAATCCATGCTG
GCCCAGCGCTTTGCGGGTTTGCTGCCGGGCATGACCGATGAGGAAGCGCTCGAAGCCGCCGCCATTGCCAGCCTCAGCGG
TCGTTTCACGCCGCAGCTGTGGCGTCAGCGGCCGTTTGCCGCTCCCCATCACACGGCCAGTTCCATCGCCTTGGTCGGCG
GCGGCTCTCCGCCCCGGCCCGGCGAAATCTCCTATGCCCATTGCGGTGCGCTTTTCCTGGATGAGCTGCCCGAGTTCGCG
CGCAGCGCTCTGGAAGCCCTGCGCGAGCCGCTGGAGACCGGGCGCATCACCATCGTGCGGGCCGTGCAGAGGGCGGAGTT
TCCGGCCCGTTTCCAGCTGGTGGCAGCCATGAACCCCTGTCCCTGCGGCTTCTGGGGGTCGCGCATCAGGGCCTGCCGCT
GCTCGCCCGATCAGGTGGCCCGCTATCAGGCACGCATCAGCGGTCCCTTGTTGGACCGTATCGATCTGCATGTGGAGGTG
GCGGCACTGTCGCCCGAGGAGTTGCTGGCAGCGCCCGAAGGGGAGAGCAGCGCTGCCGTGCAGCAACGCGTGAGCGCGGC
CAGGGACAAGGCCTTGCAGCGCCAGGGCCTGCCCAATCATCAGTTGCAAGGGGCACAGCTCGACACGCATCTGCAGCTGG
AGCCCGAGGCGCTGACCTTTGCCCACAAGGCTGCAGCGCGCCTTGGCTGGTCGGCGCGCGGCACGCACCGGGCGTTGAAG
GTGGCGCGAACCATTGCCGATCTGGCGGACTCGGATGCCATCACGCAAACCCATCTGGCCGAGGCATTGCAGTACCGCCG
CGCTCTGATGCAGCCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.941

99.609

0.527
  comM Vibrio campbellii strain DS40M4

51.176

99.609

0.51
  comM Haemophilus influenzae Rd KW20

50.984

99.219

0.506
  comM Glaesserella parasuis strain SC1401

48.919

99.414

0.486
  comM Legionella pneumophila str. Paris

47.683

100

0.482
  comM Legionella pneumophila strain ERS1305867

47.683

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.725

99.609

0.436