Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MJ608_RS18115 Genome accession   NZ_CP092733
Coordinates   3874475..3875023 (-) Length   182 a.a.
NCBI ID   WP_003064700.1    Uniprot ID   A0A5S4SNL5
Organism   Comamonas thiooxydans strain CHJ01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3869475..3880023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ608_RS18095 (MJ608_18065) moaC 3870753..3871220 (+) 468 WP_256629287.1 cyclic pyranopterin monophosphate synthase MoaC -
  MJ608_RS18100 (MJ608_18070) - 3871177..3872862 (-) 1686 WP_256631291.1 O-antigen ligase -
  MJ608_RS18105 (MJ608_18075) pilE 3872825..3873250 (-) 426 WP_256629289.1 pilin Machinery gene
  MJ608_RS18110 (MJ608_18080) - 3873439..3874158 (-) 720 WP_039050359.1 FHA domain-containing protein -
  MJ608_RS18115 (MJ608_18085) ssb 3874475..3875023 (-) 549 WP_003064700.1 single-stranded DNA-binding protein Machinery gene
  MJ608_RS18120 (MJ608_18090) - 3875297..3876469 (-) 1173 WP_039050399.1 MFS transporter -
  MJ608_RS18125 (MJ608_18095) uvrA 3876696..3879764 (+) 3069 WP_229227804.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20057.22 Da        Isoelectric Point: 5.9603

>NTDB_id=659914 MJ608_RS18115 WP_003064700.1 3874475..3875023(-) (ssb) [Comamonas thiooxydans strain CHJ01]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENREATEWHRVVFNGKLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADAMQMLGSRQGGGQQQGGYGSDDGYGESSYEAPRRQAPAPMQQRPAPAPMQQRPAPA
PMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=659914 MJ608_RS18115 WP_003064700.1 3874475..3875023(-) (ssb) [Comamonas thiooxydans strain CHJ01]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGTGACCCCGAAATGCGCACCTTCCCCAGCGGCGATCA
GGTGGCCAATGTGACCATCGCCACCACGGACCGCTGGCGCGACAAGAACACCGGAGAAAACCGCGAAGCCACCGAATGGC
ACCGTGTGGTCTTTAACGGCAAACTGGCCGAAATCGTGGGTCAGTACCTGCGCAAAGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCTCCGGCCAGGAACGCTACGCCACCGAAATCCGTGCCGACGCCATGCA
GATGCTGGGCAGCCGGCAGGGCGGTGGTCAGCAGCAAGGCGGCTACGGCAGTGATGATGGCTATGGCGAAAGCAGCTACG
AAGCACCCCGCCGTCAGGCTCCCGCTCCCATGCAGCAGCGCCCCGCACCGGCACCCATGCAGCAGCGTCCTGCTCCTGCA
CCCATGGCTCCTCCCCCCCAGCGCGCAGCTTCGGGGTTTGACGACATGGATGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4SNL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.886

100

0.571
  ssb Glaesserella parasuis strain SC1401

51.562

100

0.544
  ssb Neisseria gonorrhoeae MS11

47.514

99.451

0.473
  ssb Neisseria meningitidis MC58

44.565

100

0.451