Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AVFI_RS13545 Genome accession   NZ_CP092712
Coordinates   2941620..2943146 (-) Length   508 a.a.
NCBI ID   WP_155654491.1    Uniprot ID   -
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2936620..2948146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS13515 (AVFI_13515) - 2936720..2936887 (+) 168 WP_005421537.1 hypothetical protein -
  AVFI_RS13520 (AVFI_13520) - 2937038..2937301 (+) 264 WP_005421548.1 YihD family protein -
  AVFI_RS13525 (AVFI_13525) ccoG 2937513..2938931 (+) 1419 WP_188863540.1 cytochrome c oxidase accessory protein CcoG -
  AVFI_RS13530 (AVFI_13530) - 2938988..2939971 (+) 984 WP_005421552.1 serine/threonine protein kinase -
  AVFI_RS13535 (AVFI_13535) - 2940015..2940614 (+) 600 WP_026029200.1 thiol:disulfide interchange protein DsbA/DsbL -
  AVFI_RS13540 (AVFI_13540) - 2940658..2941521 (-) 864 WP_054775568.1 acyltransferase -
  AVFI_RS13545 (AVFI_13545) comM 2941620..2943146 (-) 1527 WP_155654491.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AVFI_RS13550 (AVFI_13550) ilvG 2943554..2945200 (+) 1647 WP_065623679.1 acetolactate synthase 2 catalytic subunit -
  AVFI_RS13555 (AVFI_13555) ilvM 2945200..2945445 (+) 246 WP_005421570.1 acetolactate synthase 2 small subunit -
  AVFI_RS13560 (AVFI_13560) - 2945458..2946405 (+) 948 WP_017018726.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55165.29 Da        Isoelectric Point: 7.0375

>NTDB_id=659801 AVFI_RS13545 WP_155654491.1 2941620..2943146(-) (comM) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MGLAIIHSRACVGVEAPPVTVEVHISNGMPGFSLVGLPETTVKEAKDRVRSAIINANFEFPSKKITVNLAPADLPKEGGR
FDLPIALGILAASDQIPENKLDGHEFVGELALSGELRRVKGVLPAALASLNAKRCLVVPDDNGDQAALVGKDIHKSAPHL
LAVCGFLCGQQQLSLLTTPQLEEQSLSLERDLQDIIGQQQGKRALEIAAAGGHNLLYLGPPGTGKTMLASRMSDLLPEMT
NDEALETAAVASLTHQNITESNWRARPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGILFLDEMPEFERKVLDSLREPL
ESGEIVISRAASKTRFPARFQLVGALNPSPTGYYEGNQTRTNPQLILRYLNRISGPLLDRFDMSLEIPLLPKGTLTEGGD
RGESTQEVKHRVLQARARMLERNGKVNALLGSREIEKHCPLDKEDAAFLENTLHQLGLSIRAYHRIIKVARTIADLSAED
KIQRIHLAEAVGYRAMDRLLKQLSAQAV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=659801 AVFI_RS13545 WP_155654491.1 2941620..2943146(-) (comM) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGGGATTAGCAATAATACACAGTCGAGCTTGTGTAGGTGTAGAAGCACCACCGGTGACGGTTGAAGTTCATATTAGTAA
TGGGATGCCAGGATTTAGTCTGGTTGGCTTACCTGAAACAACAGTAAAAGAAGCAAAAGATAGAGTAAGAAGTGCAATCA
TTAATGCCAACTTTGAGTTTCCATCTAAAAAGATCACCGTTAATTTAGCTCCTGCGGATCTTCCAAAAGAAGGTGGACGA
TTTGATCTTCCTATTGCGCTTGGGATCTTAGCAGCATCAGATCAAATACCTGAAAATAAATTGGATGGTCATGAATTTGT
TGGTGAGTTGGCTCTTTCTGGTGAGTTACGTCGAGTAAAAGGTGTTTTACCTGCCGCCTTAGCTTCACTTAATGCTAAAC
GTTGCTTAGTTGTTCCTGATGATAATGGTGATCAGGCTGCGTTGGTTGGAAAGGATATTCATAAATCTGCGCCTCACCTA
CTAGCTGTGTGTGGTTTTTTGTGTGGACAGCAGCAACTCAGTTTATTAACTACTCCTCAACTTGAAGAGCAATCCTTATC
TTTAGAACGTGACCTACAAGATATTATTGGTCAACAGCAAGGTAAGCGAGCGTTAGAGATAGCAGCCGCTGGAGGACATA
ATTTATTGTACTTAGGGCCTCCAGGTACAGGTAAAACTATGTTGGCTTCTCGTATGAGTGACTTATTGCCTGAAATGACC
AATGATGAAGCGTTAGAAACGGCTGCGGTGGCCTCGTTAACTCATCAAAATATTACAGAATCTAATTGGCGAGCCCGCCC
TTTTCGTTCACCTCATCATTCTAGCTCTATGGCGGCATTAGTGGGTGGTGGCTCTATTCCACGACCGGGAGAAATATCAT
TAGCTCATAATGGCATTTTATTTTTAGATGAGATGCCGGAGTTTGAAAGAAAAGTGCTTGATTCACTGCGGGAACCACTA
GAATCTGGTGAGATAGTCATCTCACGCGCTGCGAGTAAAACACGTTTTCCTGCACGTTTTCAATTGGTCGGAGCATTAAA
TCCTAGCCCTACAGGTTATTATGAGGGGAACCAAACGCGAACCAATCCACAGTTGATTTTACGTTACCTTAATCGAATAT
CTGGCCCCTTGTTAGATCGTTTTGATATGTCATTAGAAATACCACTATTGCCGAAGGGAACGCTAACCGAAGGTGGAGAT
AGAGGTGAAAGCACGCAAGAAGTAAAACATCGAGTTTTACAGGCTCGTGCTCGCATGTTAGAGCGTAATGGTAAAGTGAA
TGCGCTATTAGGAAGTCGAGAAATTGAAAAGCACTGCCCACTAGATAAAGAAGATGCTGCATTTTTAGAAAATACGCTAC
ATCAGTTAGGATTATCTATTCGTGCTTATCATCGGATTATTAAGGTCGCGCGTACTATTGCTGATTTATCTGCGGAAGAT
AAAATTCAACGAATCCACTTAGCTGAAGCTGTTGGTTATCGAGCTATGGATCGATTATTAAAACAATTATCTGCACAAGC
GGTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

79.568

100

0.797
  comM Vibrio campbellii strain DS40M4

79.724

100

0.797
  comM Haemophilus influenzae Rd KW20

63.583

100

0.636
  comM Glaesserella parasuis strain SC1401

62.745

100

0.63
  comM Legionella pneumophila str. Paris

49.799

98.031

0.488
  comM Legionella pneumophila strain ERS1305867

49.799

98.031

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.269

99.606

0.441