Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MKR81_RS16250 Genome accession   NZ_CP092682
Coordinates   3526231..3527754 (-) Length   507 a.a.
NCBI ID   WP_240304876.1    Uniprot ID   -
Organism   Vibrio campbellii strain IFL1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3521231..3532754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS16225 (MKR81_16225) - 3521546..3522532 (+) 987 WP_240305615.1 serine/threonine protein kinase -
  MKR81_RS16230 (MKR81_16230) - 3522567..3523169 (+) 603 WP_005429765.1 thiol:disulfide interchange protein DsbA/DsbL -
  MKR81_RS16235 (MKR81_16235) - 3523238..3524116 (-) 879 WP_005429796.1 acyltransferase -
  MKR81_RS16240 (MKR81_16240) - 3524286..3525242 (+) 957 WP_167425608.1 DUF2860 domain-containing protein -
  MKR81_RS16245 (MKR81_16245) - 3525387..3526220 (+) 834 WP_167425609.1 sensor domain-containing diguanylate cyclase -
  MKR81_RS16250 (MKR81_16250) comM 3526231..3527754 (-) 1524 WP_240304876.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MKR81_RS16255 (MKR81_16255) ilvG 3528217..3529863 (+) 1647 WP_240304877.1 acetolactate synthase 2 catalytic subunit -
  MKR81_RS16260 (MKR81_16260) ilvM 3529875..3530159 (+) 285 WP_005429819.1 acetolactate synthase 2 small subunit -
  MKR81_RS16265 (MKR81_16265) ilvE 3530172..3531110 (+) 939 WP_240304878.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54959.12 Da        Isoelectric Point: 9.0746

>NTDB_id=659687 MKR81_RS16250 WP_240304876.1 3526231..3527754(-) (comM) [Vibrio campbellii strain IFL1]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRTVKGVLPAALAANKKQRRLVVPHANGDQAALVGKEQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKEIKKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKMSFPARFQIVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSIEIPALPKGTLSEGGDR
GEPTAIVKERVNQARDCMLARSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=659687 MKR81_RS16250 WP_240304876.1 3526231..3527754(-) (comM) [Vibrio campbellii strain IFL1]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCATCGGTAAGCGTGGAAGTCCACATCAGTAA
TGGGATGCCGGGCTTTACCTTGGTGGGGTTACCTGAGACCACAGTAAAAGAATCCAAAGATCGCGTCCGCAGTGCGATCG
TCAATTCTAACTTTCAGTTTCCTGCAAAACGAATCACTGTCAATTTGGCACCTGCGGATTTGCCCAAAGAAGGTGGGCGC
TTCGATCTGCCGATTGCATTGGGAATTTTAGCGGCTTCAGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
CGGTGAATTAGCCCTTTCTGGTGGATTGAGAACGGTAAAAGGCGTGCTGCCAGCAGCGTTGGCTGCGAACAAAAAACAGC
GCCGTTTAGTGGTGCCTCATGCCAATGGTGATCAGGCGGCACTTGTTGGCAAGGAGCAGCACAAATCAGCCCAATCACTG
CTTGAGGTGTGTGCCGAACTTTGTGGTCAACACCAATTGAATTTGTACCAAACGCCCAAGAAAAAAGAGATCAAAAAACA
CGGCCGAGATTTGCAAGACATCATCGGCCAACAGCAAGGAAAACGAGCTCTAGAGATCGCTGCTGCAGGCAACCACAATC
TACTGTTTCTTGGCCCTCCAGGCACTGGTAAAACCATGTTGGCCTCTCGATTATGCGATTTGTTACCTGAGATGAGTGAT
GAAGAGGCGATGGAAACGGCTTCTGTGGCGTCACTGACTCAAAGTGAAATCAATGAACACAATTGGAAGACGCGGCCGTT
TCGTGCCCCGCATCATTCCAGCTCCATGGCGGCTTTAGTTGGTGGTGGCTCTGTGCCGAGACCGGGCGAAATATCTCTAG
CTCACAACGGGTTATTGTTTTTGGACGAGATGCCGGAGTTTGATCGTAAGGTGCTCGACTCTTTACGTGAGCCATTGGAG
TCCGGTGAAATTATTATCTCTCGGGCGCAAGGTAAGATGAGTTTTCCTGCTCGGTTCCAAATTGTAGGGGCGCTTAACCC
GAGTCCGACAGGGTATTACGAAGGCAACCAAGCCAGAACGAATCCGCAAGCCATCCTGCGTTACCTTGGCCGCTTATCAG
GCCCACTTCTTGACCGCTTTGATATGTCAATAGAAATTCCTGCATTGCCGAAAGGAACCCTCTCTGAAGGTGGCGATAGA
GGGGAACCCACGGCTATCGTCAAAGAGCGGGTGAATCAAGCTCGTGACTGTATGCTGGCTCGTAGTGGTAAGGTGAATGC
ATTATTGGGCAGTCGTGAAATTGAAGCCTTCTGCCCGTTGCAGAAAAGTGATGCGGAGTTTTTGGAAAATGCGCTGCATC
GCCTTGGATTGTCGATTCGCGCTTATCATCGCATCATAAAAGTTGCGCGTACTATTGCCGATCTGGAGGGCTCACCGCAA
ATTGAGCGAACACATCTTGCAGAAGCTTTGGGCTATCGAGCAATGGATAGGTTACTTAAACAGTTAACCGCGCAAGCCGT
TTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

98.817

100

0.988
  comM Vibrio cholerae strain A1552

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

66.075

100

0.661
  comM Glaesserella parasuis strain SC1401

64.118

100

0.645
  comM Legionella pneumophila str. Paris

49.799

98.225

0.489
  comM Legionella pneumophila strain ERS1305867

49.799

98.225

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.874

99.803

0.438