Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MKR81_RS01805 Genome accession   NZ_CP092682
Coordinates   384851..385387 (+) Length   178 a.a.
NCBI ID   WP_240304972.1    Uniprot ID   -
Organism   Vibrio campbellii strain IFL1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 379851..390387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS01790 (MKR81_01790) uvrA 379915..382737 (-) 2823 WP_240304970.1 excinuclease ABC subunit UvrA -
  MKR81_RS01795 (MKR81_01795) galU 382876..383748 (-) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  MKR81_RS01800 (MKR81_01800) qstR 383913..384557 (-) 645 WP_240304971.1 LuxR C-terminal-related transcriptional regulator Regulator
  MKR81_RS01805 (MKR81_01805) ssb 384851..385387 (+) 537 WP_240304972.1 single-stranded DNA-binding protein Machinery gene
  MKR81_RS01810 (MKR81_01810) csrD 385635..387644 (+) 2010 WP_240304973.1 RNase E specificity factor CsrD -
  MKR81_RS01815 (MKR81_01815) - 387656..389104 (+) 1449 WP_050905606.1 MSHA biogenesis protein MshI -
  MKR81_RS01820 (MKR81_01820) gspM 389101..389751 (+) 651 WP_045403571.1 type II secretion system protein GspM -
  MKR81_RS01825 (MKR81_01825) - 389744..390073 (+) 330 WP_005533781.1 hypothetical protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19764.80 Da        Isoelectric Point: 4.9269

>NTDB_id=659655 MKR81_RS01805 WP_240304972.1 384851..385387(+) (ssb) [Vibrio campbellii strain IFL1]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGASMGGGQPQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQ
PQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=659655 MKR81_RS01805 WP_240304972.1 384851..385387(+) (ssb) [Vibrio campbellii strain IFL1]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTTGCTGAAGTAGCAGGCGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGACCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCATCAATGGGTGGTGGTCAGCCTCAACAGCAGCAAC
AAGGTGGTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAGGCTCCGCAGCAA
CCTCAGCAGCAATACAACGAGCCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.888

100

0.803
  ssb Glaesserella parasuis strain SC1401

56.545

100

0.607
  ssb Neisseria meningitidis MC58

47.778

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.483