Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   MKR81_RS01800 Genome accession   NZ_CP092682
Coordinates   383913..384557 (-) Length   214 a.a.
NCBI ID   WP_240304971.1    Uniprot ID   -
Organism   Vibrio campbellii strain IFL1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 378913..389557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS01790 (MKR81_01790) uvrA 379915..382737 (-) 2823 WP_240304970.1 excinuclease ABC subunit UvrA -
  MKR81_RS01795 (MKR81_01795) galU 382876..383748 (-) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  MKR81_RS01800 (MKR81_01800) qstR 383913..384557 (-) 645 WP_240304971.1 LuxR C-terminal-related transcriptional regulator Regulator
  MKR81_RS01805 (MKR81_01805) ssb 384851..385387 (+) 537 WP_240304972.1 single-stranded DNA-binding protein Machinery gene
  MKR81_RS01810 (MKR81_01810) csrD 385635..387644 (+) 2010 WP_240304973.1 RNase E specificity factor CsrD -
  MKR81_RS01815 (MKR81_01815) - 387656..389104 (+) 1449 WP_050905606.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24565.49 Da        Isoelectric Point: 8.0592

>NTDB_id=659654 MKR81_RS01800 WP_240304971.1 383913..384557(-) (qstR) [Vibrio campbellii strain IFL1]
MKKSAYARKLFLISMEEEAGKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=659654 MKR81_RS01800 WP_240304971.1 383913..384557(-) (qstR) [Vibrio campbellii strain IFL1]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGAGGCCGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAGCACAAAGAGTTGGTTCTATCGATAAAAAACCTTCCCCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTCTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAGTTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGTAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACCGCTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATCAAGTC
TCACCTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

99.533

100

0.995
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.336

100

0.523