Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SMCB_RS01535 Genome accession   NZ_AP014569
Coordinates   345255..346802 (+) Length   515 a.a.
NCBI ID   WP_045534560.1    Uniprot ID   -
Organism   Serpentinimonas maccroryi strain B1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 340255..351802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMCB_RS12315 (SMCB_0303) - 340589..341023 (-) 435 WP_082027161.1 SWIB/MDM2 domain-containing protein -
  SMCB_RS01510 (SMCB_0304) - 341248..342075 (-) 828 WP_045534556.1 sulfite exporter TauE/SafE family protein -
  SMCB_RS01515 (SMCB_0305) - 342428..342772 (-) 345 WP_045534557.1 cell division protein ZapA -
  SMCB_RS01520 (SMCB_0306) - 342769..342987 (-) 219 WP_045537373.1 hypothetical protein -
  SMCB_RS01525 (SMCB_0307) - 343134..344582 (-) 1449 WP_045534558.1 ammonium transporter -
  SMCB_RS01530 (SMCB_0308) glnK 344618..344956 (-) 339 WP_045534559.1 P-II family nitrogen regulator -
  SMCB_RS01535 (SMCB_0309) comM 345255..346802 (+) 1548 WP_045534560.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SMCB_RS01540 (SMCB_0310) - 347527..349401 (+) 1875 WP_045537375.1 GspE/PulE family protein -

Sequence

Protein


Download         Length: 515 a.a.        Molecular weight: 54336.24 Da        Isoelectric Point: 8.2316

>NTDB_id=65937 SMCB_RS01535 WP_045534560.1 345255..346802(+) (comM) [Serpentinimonas maccroryi strain B1]
MDLCVVQSRTLVGLEALPVSVEVHLANGLPSLTLVGLADTEVKEARERVRSAILNAGLEWPHNKRITVNLAPADLPKESG
RFDLPIALGILAASGQIDGAALAGHEFAGELSLSGALRPIRGALCMGLAFLRAAGAGQTVCTALVLPPVSAEEAALVRQA
RVYRARHLLDVVQRFAPAGMVLPEPAHPDGWVLLQGSAAVQGQDLPDLADVKGQAGARRALEIAAAGAHSLLMSGPPGSG
KSMLAQRLPGILPALDDQQALEAAAVASLAGRFRPEHWGQRPFSAPHHSASATALVGGGNPPRPGEISLAHHGVLFLDEL
PEFPRAALEALREPLESGQIRISRAARQTDFPARFQLVAAMNPCPCGYLGASHRACRCTPDQVQRYQGKLSGPLLDRIDL
HVEVPLLPPGQLLDSAAAETSAAVRERVAQARERALQRQGHANHTLHGPALQRHAALEPAAAQLLQQAATRLGWSGRATH
RALRVARTIADLAASERIHGAHLAEAVQYRQPGNP

Nucleotide


Download         Length: 1548 bp        

>NTDB_id=65937 SMCB_RS01535 WP_045534560.1 345255..346802(+) (comM) [Serpentinimonas maccroryi strain B1]
GTGGATTTGTGCGTGGTTCAAAGTCGCACGCTGGTCGGGCTCGAGGCCCTGCCGGTGAGCGTGGAGGTGCATTTGGCCAA
CGGCCTGCCCAGTCTGACGCTGGTGGGCTTGGCCGACACCGAGGTCAAAGAGGCGCGCGAGCGGGTGCGCTCGGCCATCT
TGAACGCCGGGCTGGAGTGGCCGCACAACAAGCGCATCACGGTTAACCTAGCCCCGGCCGACCTGCCCAAGGAGTCGGGG
CGCTTTGATTTGCCCATCGCCTTGGGCATTTTGGCCGCCAGCGGCCAGATCGACGGCGCGGCGCTGGCCGGGCACGAATT
TGCTGGCGAGCTCTCGCTCAGCGGCGCCTTGCGTCCGATCCGGGGCGCCCTGTGCATGGGGCTGGCTTTCTTGCGCGCGG
CCGGTGCGGGTCAAACCGTATGCACCGCTTTGGTGCTGCCCCCGGTCAGCGCCGAAGAGGCCGCCTTGGTGCGCCAAGCG
CGCGTGTACCGGGCGCGCCACCTGCTCGATGTGGTGCAGCGCTTTGCTCCAGCCGGCATGGTGTTGCCCGAGCCGGCGCA
CCCCGACGGCTGGGTGCTGCTGCAGGGCAGCGCTGCGGTGCAGGGGCAAGATTTGCCCGATTTGGCCGATGTGAAGGGCC
AGGCCGGTGCGCGGCGGGCACTGGAGATCGCTGCCGCGGGCGCGCACAGCCTGCTGATGAGCGGCCCGCCGGGCTCGGGC
AAGTCGATGCTGGCGCAGCGCCTGCCCGGCATCCTGCCGGCGCTGGACGACCAGCAGGCGCTGGAGGCGGCGGCGGTGGC
GTCGCTGGCGGGGCGCTTCAGGCCCGAGCACTGGGGCCAGCGGCCTTTTAGCGCGCCGCACCACAGCGCCAGCGCCACCG
CGCTAGTGGGCGGCGGCAACCCGCCGCGGCCGGGCGAGATATCGCTGGCGCACCACGGCGTGCTGTTCCTCGATGAGCTG
CCCGAATTCCCCCGCGCCGCCCTCGAGGCCTTGCGCGAGCCACTCGAGAGCGGGCAGATCCGCATCTCGCGCGCGGCGCG
CCAGACCGATTTTCCGGCCCGCTTCCAGTTGGTGGCTGCCATGAATCCCTGCCCCTGCGGCTATCTGGGGGCCAGCCACA
GGGCCTGCCGCTGCACCCCCGACCAAGTGCAGCGCTACCAGGGCAAGCTCAGCGGCCCCTTGCTGGACCGCATCGACCTG
CACGTGGAGGTGCCGCTGCTGCCGCCCGGGCAGTTGCTCGACAGCGCGGCGGCGGAGACCAGCGCAGCGGTGCGCGAGCG
CGTCGCCCAAGCGCGCGAGCGGGCGCTGCAGCGCCAGGGCCACGCCAACCACACCCTGCACGGCCCAGCGCTGCAACGCC
ATGCGGCGCTGGAGCCCGCTGCCGCACAGTTGCTGCAGCAAGCCGCCACGCGGCTGGGCTGGTCCGGGCGCGCCACCCAC
CGCGCGCTGCGCGTGGCGCGCACCATCGCCGACTTGGCCGCCAGCGAGCGCATCCACGGCGCGCACCTGGCTGAAGCGGT
TCAATACCGACAGCCGGGAAACCCTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(419-510)

Subunit ChlI of Mg-chelatase (ChlI)

(21-129)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(207-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.047

99.612

0.518
  comM Haemophilus influenzae Rd KW20

51.562

99.417

0.513
  comM Vibrio campbellii strain DS40M4

50.775

100

0.509
  comM Glaesserella parasuis strain SC1401

49.903

99.612

0.497
  comM Legionella pneumophila str. Paris

48.643

100

0.487
  comM Legionella pneumophila strain ERS1305867

48.643

100

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.136

100

0.421

Multiple sequence alignment