Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SRAA_RS09810 Genome accession   NZ_AP014568
Coordinates   2101302..2102849 (+) Length   515 a.a.
NCBI ID   WP_045533676.1    Uniprot ID   -
Organism   Serpentinimonas raichei strain A1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2096302..2107849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRAA_RS09780 (SRAA_1953) - 2097708..2097944 (+) 237 WP_045532406.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  SRAA_RS09785 (SRAA_1954) - 2097948..2098391 (+) 444 WP_045532408.1 PIN domain-containing protein -
  SRAA_RS09790 (SRAA_1955) - 2098500..2098799 (+) 300 WP_045532410.1 nucleotidyltransferase domain-containing protein -
  SRAA_RS09795 (SRAA_1956) - 2098796..2099113 (+) 318 WP_197538508.1 hypothetical protein -
  SRAA_RS09800 (SRAA_1957) - 2099192..2100625 (-) 1434 WP_045532412.1 ammonium transporter -
  SRAA_RS09805 (SRAA_1958) glnK 2100661..2100999 (-) 339 WP_045532413.1 P-II family nitrogen regulator -
  SRAA_RS09810 (SRAA_1959) comM 2101302..2102849 (+) 1548 WP_045533676.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SRAA_RS09815 (SRAA_1960) - 2102912..2105455 (+) 2544 WP_082040105.1 GspE/PulE family protein -

Sequence

Protein


Download         Length: 515 a.a.        Molecular weight: 54461.47 Da        Isoelectric Point: 8.4242

>NTDB_id=65931 SRAA_RS09810 WP_045533676.1 2101302..2102849(+) (comM) [Serpentinimonas raichei strain A1]
MGLCVVQSRTLVGLDALPVSVEVHLANGLPSLTLVGLADTEVKEARERVRSAILNAGLDWPHNKRITVNLAPADLPKESG
RFDLPIALGILAASGQIDGAALAGYEFAGELSLSGALRPVRGALCMGLAFLRGHGAGQPPCTALVLPPGSAEEAALVRQA
RVYRAHHLLDVVQRFAPAGAALPEPPHPDGWALLQGTTQVQPLHLPDLADVKGQAGARRALEIAAAGAHSLLMSGPPGSG
KSMLAQRLPGILPALDDQQALEAAAVASLAGRFSPEHWGLRPFSAPHHSASATALVGGGNPPRPGEISLAHQGVLFLDEL
PEFPRAALEALREPLESGQIRISRAARQTDFPARFQLVAAMNPCPCGYLGASHRNCRCTPDQVLRYQGKLSGPLLDRIDL
HVEVPLLPPQQLLERAAAESSAAVRERVVQARQRALQRQGHANQALHGPELQRHAALEPAADKLLQQAASRLGWSGRATH
RALRVARTIADLAASERILSAHLAEAVQYRQPGPI

Nucleotide


Download         Length: 1548 bp        

>NTDB_id=65931 SRAA_RS09810 WP_045533676.1 2101302..2102849(+) (comM) [Serpentinimonas raichei strain A1]
GTGGGTTTGTGCGTGGTTCAAAGCCGCACACTGGTGGGGCTAGACGCTTTGCCGGTGAGCGTAGAAGTGCATCTGGCCAA
CGGCCTGCCCAGCCTGACGCTGGTGGGCTTGGCCGACACCGAGGTGAAGGAGGCGCGCGAGCGCGTGCGCTCGGCGATAT
TGAACGCTGGGCTGGATTGGCCGCACAACAAGCGCATTACGGTCAACCTGGCCCCGGCCGATCTGCCCAAAGAATCGGGG
CGCTTTGATTTGCCGATCGCGCTTGGCATTCTGGCCGCCAGCGGCCAGATCGACGGCGCGGCGCTGGCCGGCTACGAGTT
TGCCGGTGAGCTCTCGCTCAGTGGCGCCTTGCGCCCGGTCCGGGGCGCTTTGTGCATGGGCTTGGCTTTTTTGCGCGGCC
ATGGCGCGGGCCAACCCCCATGCACCGCTTTGGTGCTGCCCCCGGGCAGCGCCGAGGAAGCGGCCTTGGTGCGCCAGGCG
CGGGTGTACCGGGCGCACCATTTGCTGGATGTGGTGCAGCGCTTTGCGCCCGCTGGTGCTGCGCTGCCCGAACCCCCGCA
CCCCGACGGCTGGGCCTTGTTGCAGGGCACGACGCAGGTGCAGCCACTCCATCTGCCCGATTTGGCCGATGTGAAGGGGC
AAGCCGGGGCGCGGCGGGCGCTGGAGATCGCCGCCGCGGGCGCGCACAGCCTGCTGATGAGCGGCCCGCCGGGCTCGGGC
AAGTCGATGCTGGCGCAGCGCCTGCCCGGCATCTTGCCGGCGCTGGACGACCAGCAGGCGCTGGAGGCGGCGGCGGTGGC
TTCGCTGGCCGGGCGCTTTAGTCCCGAGCACTGGGGCCTACGGCCCTTTAGCGCACCGCACCACAGCGCCAGCGCCACCG
CCTTGGTGGGCGGCGGCAACCCGCCCCGGCCGGGCGAGATTTCGCTGGCGCACCAAGGGGTGCTGTTCCTGGACGAACTG
CCCGAGTTTCCGCGCGCCGCCCTCGAGGCCTTGCGCGAGCCGCTCGAGAGCGGGCAGATTCGCATCTCGCGTGCGGCGCG
CCAGACCGATTTTCCGGCCCGCTTTCAACTGGTGGCGGCCATGAACCCCTGCCCCTGCGGCTACCTAGGGGCCAGCCACC
GCAACTGCCGCTGCACCCCCGACCAGGTGCTGCGCTACCAAGGCAAGCTCAGCGGCCCCTTGCTGGACCGCATCGACCTG
CACGTCGAGGTGCCGCTGCTGCCACCGCAGCAGTTGCTCGAACGCGCCGCAGCCGAGTCGAGCGCGGCGGTGCGCGAGCG
CGTCGTGCAGGCGCGCCAACGGGCGTTGCAGCGCCAAGGCCACGCCAACCAAGCCCTGCACGGCCCCGAGCTGCAACGCC
ATGCGGCACTGGAACCTGCTGCCGACAAGCTGCTGCAACAAGCGGCCAGCCGACTCGGCTGGTCGGGCCGCGCCACCCAC
CGCGCGCTGCGGGTGGCGCGCACCATTGCCGACTTGGCCGCCAGCGAACGCATCCTGAGCGCGCATCTGGCGGAAGCGGT
GCAGTACCGCCAGCCGGGACCGATTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(419-510)

Subunit ChlI of Mg-chelatase (ChlI)

(21-128)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(207-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.437

99.612

0.522
  comM Vibrio campbellii strain DS40M4

51.149

100

0.518
  comM Haemophilus influenzae Rd KW20

50.781

99.417

0.505
  comM Glaesserella parasuis strain SC1401

49.708

99.612

0.495
  comM Legionella pneumophila str. Paris

49.027

99.806

0.489
  comM Legionella pneumophila strain ERS1305867

49.027

99.806

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.524

100

0.425

Multiple sequence alignment