Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MKM89_RS24925 Genome accession   NZ_CP092512
Coordinates   5118316..5119836 (+) Length   506 a.a.
NCBI ID   WP_096833957.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain EF262     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5113316..5124836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKM89_RS24905 (MKM89_24900) ilvE 5114876..5115805 (-) 930 WP_002883171.1 branched-chain-amino-acid transaminase -
  MKM89_RS24910 (MKM89_24905) ilvM 5115822..5116079 (-) 258 WP_004886870.1 acetolactate synthase 2 small subunit -
  MKM89_RS24915 (MKM89_24910) ilvG 5116076..5117722 (-) 1647 WP_004886873.1 acetolactate synthase 2 catalytic subunit -
  MKM89_RS27840 ilvX 5117725..5117778 (-) 54 WP_201281575.1 peptide IlvX -
  MKM89_RS24920 (MKM89_24915) ilvL 5117863..5117961 (-) 99 WP_001311244.1 ilv operon leader peptide -
  MKM89_RS24925 (MKM89_24920) comM 5118316..5119836 (+) 1521 WP_096833957.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MKM89_RS24930 (MKM89_24925) - 5119861..5120199 (-) 339 WP_004886877.1 DUF413 domain-containing protein -
  MKM89_RS24935 (MKM89_24930) hdfR 5120318..5121139 (+) 822 WP_004886879.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55121.47 Da        Isoelectric Point: 8.4873

>NTDB_id=658290 MKM89_RS24925 WP_096833957.1 5118316..5119836(+) (comM) [Klebsiella quasipneumoniae strain EF262]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSPPLAEAPSVDERGEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESTAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRTSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGTQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLLEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=658290 MKM89_RS24925 WP_096833957.1 5118316..5119836(+) (comM) [Klebsiella quasipneumoniae strain EF262]
ATGTCGCTCGCCATCGTCTATACCCGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTGTCGAGGTTCATCTCAGCAA
CGGTCTGCCCGGCCTGACTATGGTCGGACTGCCGGAGACCACCGTGAAAGAGGCCCGTGACCGGGTTCGCAGCGCCCTGA
TCAACAGCGGCTACGCTTTCCCTGCGAAGAAAATAACCATTAACCTGGCGCCAGCGGATCTGCCTAAAGAGGGCGGGCGA
TACGATCTACCTATCGCTCTCGCGCTTCTCGTTGCCTCAGAGCAGCTCAACACGACGCGACTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTCACAGGTGGGTTACGCGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAAGCCATCAAAGCCGGCC
GGCGTATAGTCGTCTCCTCTGATAATGCGGCTGAGGTCGGCCTGATCGGCGGCAGCGACTGCCTGGTCGCCGACCATCTG
CAGGAGGTGTGTGCTTTTCTCGCGGGGCAGACATCGCTTTCGCCGCCTCTCGCCGAGGCACCCTCTGTTGATGAACGCGG
CGAAGATCTGCGCGATGTTATCGGCCAGCAGCAGGGCAAGCGAGCGCTGGAGATTGTGGCCGCCGGGGGTCACAACCTGC
TCCTGATCGGCCCGCCCGGCACCGGGAAAACCATGCTTGCCAGCCGGCTACCCGGTCTCCTGCCGCCATTAAGCAATCAG
GAAGCACTGGAGAGCACGGCCATTCAGAGCCTGGTCAATCTGCATACCGCGAAGACCCGGTGGCGTCAGAGGCCGTTTCG
CGCACCTCATCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGCGGCTCGATACCGGTCCCCGGTGAGATTTCCCTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAGCTGCCGGAGTTTGAGCGGCGTGTACTGGATGCGCTGCGCGAACCCATTGAGTCA
GGCAAGATCCATATATCACGCTCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATCGCGGCAATGAATCCAAG
CCCGACAGGGCATTATCAGGGCAAACATAATCGTACATCGCCTGAGCAGACATTACGTTATCTGGGACGTCTGTCAGGCC
CCTTCCTTGACCGCTTCGATCTCTCCTTAGAGATCCCGCTGCCGCCGCCAGGGATACTGAGCCAGGGCACGCAGGGCGAA
GAGTCTAGCGCAACGGTCCGACAACGGGTGCTGGCGGCGCGCGAACGGCAAATGCTCAGACAAAATAAGCTCAATGCCCA
CCTTGAGAATCGTGAAATGAAGAGCTGCTGCCACTTACGGCGGGAGGACGCTGTCTGGCTGGAACAGACGCTAACGCAGC
TGGGGCTCTCTATACGAGCCTGGCAGCGTCTGTTAAAGGTGGCGAGAACCATTGCCGATCTGGCAGAGGCTGAAGAGATT
GAACGCCGTCATTTGCTGGAGGCGCTCAGCTATCGGGCGATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.47

100

0.611
  comM Glaesserella parasuis strain SC1401

59.921

100

0.603
  comM Vibrio cholerae strain A1552

60.04

99.407

0.597
  comM Vibrio campbellii strain DS40M4

59.722

99.605

0.595
  comM Legionella pneumophila str. Paris

49.698

98.221

0.488
  comM Legionella pneumophila strain ERS1305867

49.698

98.221

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.814

100

0.453