Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MJ595_RS07285 Genome accession   NZ_CP092489
Coordinates   1652797..1654302 (+) Length   501 a.a.
NCBI ID   WP_263081779.1    Uniprot ID   -
Organism   Endozoicomonas sp. Mp262     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1647797..1659302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ595_RS07260 - 1648179..1649036 (-) 858 WP_263081773.1 carboxylate/amino acid/amine transporter -
  MJ595_RS07265 - 1649083..1649541 (+) 459 WP_263081774.1 DUF6314 family protein -
  MJ595_RS07270 aphA 1649795..1650493 (-) 699 WP_263081775.1 acid phosphatase AphA -
  MJ595_RS07275 - 1650659..1651123 (+) 465 WP_263081776.1 DUF1097 domain-containing protein -
  MJ595_RS07280 - 1651118..1652614 (-) 1497 WP_263081777.1 HAMP domain-containing histidine kinase -
  MJ595_RS07285 comM 1652797..1654302 (+) 1506 WP_263081779.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MJ595_RS07290 - 1654323..1655075 (-) 753 WP_263081780.1 redoxin domain-containing protein -
  MJ595_RS07295 - 1655246..1655851 (+) 606 WP_263081781.1 MarC family protein -
  MJ595_RS07300 rep 1655885..1657909 (+) 2025 WP_263081782.1 DNA helicase Rep -
  MJ595_RS07305 - 1658050..1658841 (-) 792 WP_263081783.1 hypothetical protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54437.23 Da        Isoelectric Point: 9.2134

>NTDB_id=658047 MJ595_RS07285 WP_263081779.1 1652797..1654302(+) (comM) [Endozoicomonas sp. Mp262]
MSRLATVNTLAQSGLSAPDVSVEVHLSAGLPALNIVGLPEAAVRESKDRVRSALINSGFDFPTSRITVNLAPADLPKEGG
RFDLPIALGILAASGQLASEALTHRAFVGELALSGKLRAIKAVLPVAIACGQQKMELIIPEESAKIAALASQTRIIAAND
LQGVCAYLSGNQILSPLEGTHHCKTPHNYPDLSDVKGQSQAKRALITAAAGGHHILLFGPPGTGKTMLASRLPGILPLLE
EREALEVASIHSLVSSNNSLNWGQRPFRTPHHSSSPVSLVGGGSNPKPGEVSFAHNGVLFLDEMPEFQRQALEMLREPLE
NGEVVITRAKSQQRYPASFQLVAAMNPCPCGYLGDGRRACRCTPDQISRYRNKLSGPFLDRIDLQVEVASQKTSQLLDDI
PHQPEETSAHIQKTVSLARNHQLKRQGKPNAWLTGQELHKHCQLGQPERQFIQDISDKFAYSGRAIHRILRVSRTLADLD
PSPRVQKKHLAEAVHYRRFDR

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=658047 MJ595_RS07285 WP_263081779.1 1652797..1654302(+) (comM) [Endozoicomonas sp. Mp262]
ATGTCACGGTTAGCTACGGTTAATACCCTGGCGCAGTCCGGTTTGAGTGCCCCTGATGTCTCTGTGGAAGTCCATTTATC
GGCCGGGTTGCCTGCCCTTAATATTGTGGGACTGCCAGAAGCGGCTGTCAGGGAAAGCAAGGATCGGGTAAGAAGTGCAT
TGATAAACAGCGGATTTGATTTTCCAACCAGCAGAATCACCGTTAATCTGGCTCCAGCAGATTTGCCAAAAGAAGGAGGA
CGCTTTGACCTGCCCATTGCCCTGGGGATTCTGGCAGCCTCTGGTCAGCTCGCTTCAGAGGCATTAACCCATAGAGCTTT
TGTGGGGGAGCTGGCATTATCCGGGAAATTGCGAGCTATTAAAGCGGTGCTTCCAGTTGCCATCGCCTGTGGTCAACAGA
AAATGGAGCTGATAATCCCTGAAGAGAGCGCGAAAATAGCTGCTCTGGCCAGCCAGACCCGCATTATAGCGGCTAATGAT
TTACAGGGTGTCTGTGCCTATTTGAGCGGTAACCAGATCCTCTCTCCCCTGGAAGGAACGCACCACTGTAAAACGCCCCA
TAACTACCCGGATCTCTCTGACGTCAAAGGGCAGTCCCAGGCTAAACGGGCTTTAATTACAGCGGCGGCAGGAGGGCACC
ACATTCTGCTTTTTGGTCCGCCTGGCACCGGTAAAACCATGCTGGCCTCCAGGCTACCTGGCATCCTTCCCTTACTGGAA
GAACGTGAAGCCCTTGAGGTTGCCTCCATTCACTCACTGGTATCAAGCAATAATTCCCTAAACTGGGGCCAAAGGCCCTT
TCGTACCCCTCACCATTCTTCATCTCCGGTATCCCTGGTGGGCGGTGGCAGTAACCCCAAGCCGGGTGAGGTCTCTTTTG
CGCACAACGGTGTTCTTTTTCTTGATGAAATGCCTGAGTTCCAAAGGCAGGCCCTGGAAATGCTGAGGGAGCCTCTGGAA
AATGGAGAGGTTGTAATAACCCGGGCCAAATCCCAGCAACGTTATCCCGCATCCTTTCAGCTGGTTGCAGCCATGAACCC
GTGTCCCTGTGGTTACCTTGGTGATGGTCGCCGGGCCTGCCGCTGTACTCCGGACCAAATCAGTCGTTATCGCAACAAAC
TATCCGGCCCTTTTCTGGATCGGATTGACCTGCAAGTGGAAGTTGCCTCACAGAAAACCAGTCAGCTCCTGGATGACATC
CCCCACCAACCGGAAGAAACCTCTGCCCATATCCAAAAGACAGTTTCCCTGGCCAGAAACCATCAGCTCAAACGGCAAGG
GAAACCCAATGCCTGGCTAACGGGGCAGGAGCTTCATAAACATTGCCAGCTGGGTCAGCCTGAACGGCAGTTTATTCAGG
ATATATCGGATAAGTTTGCTTATTCCGGGCGCGCTATTCACCGGATTCTCAGGGTTTCCAGAACCCTGGCAGACCTTGAC
CCGTCACCCCGGGTTCAAAAAAAACATCTGGCGGAAGCGGTTCATTACCGGCGGTTTGATCGGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(22-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.282

100

0.519
  comM Vibrio cholerae strain A1552

51.303

99.601

0.511
  comM Vibrio campbellii strain DS40M4

51.303

99.601

0.511
  comM Glaesserella parasuis strain SC1401

50.696

100

0.509
  comM Legionella pneumophila str. Paris

49.395

99.002

0.489
  comM Legionella pneumophila strain ERS1305867

49.395

99.002

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.834

100

0.459