Detailed information NTG0065788

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: NY40_RS03275
• Genome accession: NZ_AP014523
• Coordinates: 645187..646317 (+)
• Length: 376 a.a.
• NCBI ID: WP_021177591.1
• Uniprot ID: A0A060PQ76
• Organism: Helicobacter pylori NY40
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 640187..651317

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NY40_RS03240 (NY40_0649)	panD	640632..640985 (+)	354	WP_041050389.1	aspartate 1-decarboxylase	-
NY40_RS03245 (NY40_0650)	-	640988..641281 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
NY40_RS03250 (NY40_0651)	-	641281..642285 (+)	1005	WP_041050391.1	PDZ domain-containing protein	-
NY40_RS03255 (NY40_0652)	comB6	642293..643348 (+)	1056	WP_041050393.1	P-type conjugative transfer protein TrbL	Machinery gene
NY40_RS03260	comB7	643364..643477 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
NY40_RS03265 (NY40_0653)	comB8	643474..644211 (+)	738	WP_021177589.1	type IV secretion system protein	Machinery gene
NY40_RS03270 (NY40_0654)	comB9	644211..645194 (+)	984	WP_041050396.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
NY40_RS03275 (NY40_0655)	comB10	645187..646317 (+)	1131	WP_021177591.1	DNA type IV secretion system protein ComB10	Machinery gene
NY40_RS03280 (NY40_0656)	-	646387..647805 (+)	1419	WP_041050398.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
NY40_RS03285 (NY40_0657)	gmd	647815..648960 (+)	1146	WP_041050400.1	GDP-mannose 4,6-dehydratase	-
NY40_RS03290 (NY40_0658)	-	648953..649885 (+)	933	WP_041050402.1	GDP-L-fucose synthase family protein	-
NY40_RS09200 (NY40_0659)	-	650235..650528 (-)	294	WP_042966245.1	hypothetical protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 42004.49 Da
• Isoelectric Point: 9.7473

>NTDB_id=65788 NY40_RS03275 WP_021177591.1 645187..646317(+) (comB10) [Helicobacter pylori NY40]
MNKWIKGAVVFVGGFATIMTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKTTPPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
TATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=65788 NY40_RS03275 WP_021177591.1 645187..646317(+) (comB10) [Helicobacter pylori NY40]
ATGAATAAGTGGATTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTATGACCATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAATCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACAT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCTAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCCAAAGAAGAGACTTTTACTAGCCCTCCCATGGATCCAAAAAC
AACCCCCCCTAAAAAAGATTTTTCTCCAAAACAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ACCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCACAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCTGTTTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGAATC
ATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCCATTGTGGTGATTAG
AGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

3D structure

• AlphaFold DB: A0A060PQ76

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.745	100	0.957