Detailed information NTG0065787

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: NY40_RS03270
• Genome accession: NZ_AP014523
• Coordinates: 644211..645194 (+)
• Length: 327 a.a.
• NCBI ID: WP_041050396.1
• Uniprot ID: A0A060PTR5
• Organism: Helicobacter pylori NY40
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 639211..650194

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NY40_RS03240 (NY40_0649)	panD	640632..640985 (+)	354	WP_041050389.1	aspartate 1-decarboxylase	-
NY40_RS03245 (NY40_0650)	-	640988..641281 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
NY40_RS03250 (NY40_0651)	-	641281..642285 (+)	1005	WP_041050391.1	PDZ domain-containing protein	-
NY40_RS03255 (NY40_0652)	comB6	642293..643348 (+)	1056	WP_041050393.1	P-type conjugative transfer protein TrbL	Machinery gene
NY40_RS03260	comB7	643364..643477 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
NY40_RS03265 (NY40_0653)	comB8	643474..644211 (+)	738	WP_021177589.1	type IV secretion system protein	Machinery gene
NY40_RS03270 (NY40_0654)	comB9	644211..645194 (+)	984	WP_041050396.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
NY40_RS03275 (NY40_0655)	comB10	645187..646317 (+)	1131	WP_021177591.1	DNA type IV secretion system protein ComB10	Machinery gene
NY40_RS03280 (NY40_0656)	-	646387..647805 (+)	1419	WP_041050398.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
NY40_RS03285 (NY40_0657)	gmd	647815..648960 (+)	1146	WP_041050400.1	GDP-mannose 4,6-dehydratase	-
NY40_RS03290 (NY40_0658)	-	648953..649885 (+)	933	WP_041050402.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37880.70 Da
• Isoelectric Point: 9.5436

>NTDB_id=65787 NY40_RS03270 WP_041050396.1 644211..645194(+) (comB9) [Helicobacter pylori NY40]
MRKVLYALMGFLLTFSVLKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQKENKENMAENAPKDAQKNNKPLKEEKEETKEKEEVIIIGDNTNAMKIIKKDIQKGYKALKSSQRKWYCLW
ACSKKSKLSLMPEEIFNDKQFTYFKFDKRLALSKFPVVYKVVDGYDNPVNTRIVGDYIIAEDVSTKWTLRLGKDYLCIRF
VKKAKDE

Nucleotide

• Length: 984 bp

>NTDB_id=65787 NY40_RS03270 WP_041050396.1 644211..645194(+) (comB9) [Helicobacter pylori NY40]
ATGCGTAAGGTTTTATACGCTCTCATGGGCTTTTTGTTGACTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCAGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACCTTGAACATTGATTATTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
CAACGATCGTATTTTACTCATCAAACCCTTACAAATCGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTTTGAAACCCCAAAAAGAAAATAAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCAAAA
AAATAATAAGCCCCTAAAAGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAGGTGATAATTATTGGCGATAACACCAACG
CGATGAAAATTATTAAAAAAGACATCCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTATGG
GCTTGTTCTAAAAAATCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGA
CAAAAGATTAGCGCTCTCTAAATTCCCGGTGGTTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTG
TGGGCGATTACATTATCGCTGAAGACGTTTCTACTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGCATCCGCTTT
GTCAAAAAGGCTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-318)

3D structure

• AlphaFold DB: A0A060PTR5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	90.244	100	0.905