Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | H7R53_RS05495 | Genome accession | NZ_AP022087 |
| Coordinates | 1153114..1154106 (+) | Length | 330 a.a. |
| NCBI ID | WP_000081550.1 | Uniprot ID | A0A370V765 |
| Organism | Escherichia coli strain WP4-S18-ESBL-07 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1148114..1159106
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R53_RS05465 (WP4S18E07_10700) | ispD | 1148175..1148885 (+) | 711 | WP_000246131.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| H7R53_RS05470 (WP4S18E07_10710) | ispF | 1148885..1149364 (+) | 480 | WP_001219242.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| H7R53_RS05475 (WP4S18E07_10720) | truD | 1149361..1150410 (+) | 1050 | WP_000568924.1 | tRNA pseudouridine(13) synthase TruD | - |
| H7R53_RS05480 (WP4S18E07_10730) | surE | 1150391..1151152 (+) | 762 | WP_001295182.1 | 5'/3'-nucleotidase SurE | - |
| H7R53_RS05485 (WP4S18E07_10740) | pcm | 1151146..1151772 (+) | 627 | WP_000254706.1 | protein-L-isoaspartate O-methyltransferase | - |
| H7R53_RS05490 (WP4S18E07_10750) | nlpD | 1151957..1153051 (+) | 1095 | WP_306174120.1 | murein hydrolase activator NlpD | - |
| H7R53_RS05495 (WP4S18E07_10760) | rpoS | 1153114..1154106 (+) | 993 | WP_000081550.1 | RNA polymerase sigma factor RpoS | Regulator |
| H7R53_RS05500 (WP4S18E07_10770) | - | 1154227..1154634 (-) | 408 | WP_001208079.1 | MarR family transcriptional regulator | - |
| H7R53_RS05505 (WP4S18E07_10780) | - | 1154781..1155374 (+) | 594 | WP_001237177.1 | non-oxidative hydroxyarylic acid decarboxylases subunit B | - |
| H7R53_RS05510 (WP4S18E07_10790) | - | 1155374..1156801 (+) | 1428 | WP_000863205.1 | non-oxidative hydroxyarylic acid decarboxylases subunit C | - |
| H7R53_RS05515 (WP4S18E07_10800) | - | 1156812..1157048 (+) | 237 | WP_000562977.1 | non-oxidative hydroxyarylic acid decarboxylases subunit D | - |
| H7R53_RS05520 (WP4S18E07_10810) | ygbN | 1157087..1158451 (-) | 1365 | WP_000104454.1 | GntP family transporter | - |
Sequence
Protein
Download Length: 330 a.a. Molecular weight: 37972.84 Da Isoelectric Point: 4.5597
>NTDB_id=65784 H7R53_RS05495 WP_000081550.1 1153114..1154106(+) (rpoS) [Escherichia coli strain WP4-S18-ESBL-07]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE
Nucleotide
Download Length: 993 bp
>NTDB_id=65784 H7R53_RS05495 WP_000081550.1 1153114..1154106(+) (rpoS) [Escherichia coli strain WP4-S18-ESBL-07]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
73.065 |
97.879 |
0.715 |