Detailed information NTG0065784

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: NY40_RS03255
• Genome accession: NZ_AP014523
• Coordinates: 642293..643348 (+)
• Length: 351 a.a.
• NCBI ID: WP_041050393.1
• Uniprot ID: -
• Organism: Helicobacter pylori NY40
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 637293..648348

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NY40_RS03225 (NY40_0646)	-	637714..638127 (+)	414	WP_001023005.1	universal stress protein	-
NY40_RS03230 (NY40_0647)	-	638142..638417 (+)	276	WP_041050385.1	ATP-dependent Clp protease adaptor ClpS	-
NY40_RS03235 (NY40_0648)	-	638417..640642 (+)	2226	WP_041050387.1	AAA family ATPase	-
NY40_RS03240 (NY40_0649)	panD	640632..640985 (+)	354	WP_041050389.1	aspartate 1-decarboxylase	-
NY40_RS03245 (NY40_0650)	-	640988..641281 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
NY40_RS03250 (NY40_0651)	-	641281..642285 (+)	1005	WP_041050391.1	PDZ domain-containing protein	-
NY40_RS03255 (NY40_0652)	comB6	642293..643348 (+)	1056	WP_041050393.1	P-type conjugative transfer protein TrbL	Machinery gene
NY40_RS03260	comB7	643364..643477 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
NY40_RS03265 (NY40_0653)	comB8	643474..644211 (+)	738	WP_021177589.1	type IV secretion system protein	Machinery gene
NY40_RS03270 (NY40_0654)	comB9	644211..645194 (+)	984	WP_041050396.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
NY40_RS03275 (NY40_0655)	comB10	645187..646317 (+)	1131	WP_021177591.1	DNA type IV secretion system protein ComB10	Machinery gene
NY40_RS03280 (NY40_0656)	-	646387..647805 (+)	1419	WP_041050398.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39730.67 Da
• Isoelectric Point: 9.0419

>NTDB_id=65784 NY40_RS03255 WP_041050393.1 642293..643348(+) (comB6) [Helicobacter pylori NY40]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVIICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALTSLQYITTSPAPSSVSPSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=65784 NY40_RS03255 WP_041050393.1 642293..643348(+) (comB6) [Helicobacter pylori NY40]
ATGAAACATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTAAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCACCTAACATGATCGCGCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCATGCACTTTCTTTAGATTTTATCTTTAATCATGGTTTCTATGCCCTTAGCT
TTATTAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTTTTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTAATTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTTTCAGTTACTAAGGCTTTGATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCTCTTACTTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTCCTTCTACAAGCGGTAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACT
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.442	100	0.954