Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | NY40_RS03260 | Genome accession | NZ_AP014523 |
| Coordinates | 643364..643477 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217873.1 | Uniprot ID | G2MCV1 |
| Organism | Helicobacter pylori NY40 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 638364..648477
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NY40_RS03235 (NY40_0648) | - | 638417..640642 (+) | 2226 | WP_041050387.1 | AAA family ATPase | - |
| NY40_RS03240 (NY40_0649) | panD | 640632..640985 (+) | 354 | WP_041050389.1 | aspartate 1-decarboxylase | - |
| NY40_RS03245 (NY40_0650) | - | 640988..641281 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| NY40_RS03250 (NY40_0651) | - | 641281..642285 (+) | 1005 | WP_041050391.1 | PDZ domain-containing protein | - |
| NY40_RS03255 (NY40_0652) | comB6 | 642293..643348 (+) | 1056 | WP_041050393.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| NY40_RS03260 | comB7 | 643364..643477 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| NY40_RS03265 (NY40_0653) | comB8 | 643474..644211 (+) | 738 | WP_021177589.1 | type IV secretion system protein | Machinery gene |
| NY40_RS03270 (NY40_0654) | comB9 | 644211..645194 (+) | 984 | WP_041050396.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| NY40_RS03275 (NY40_0655) | comB10 | 645187..646317 (+) | 1131 | WP_021177591.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| NY40_RS03280 (NY40_0656) | - | 646387..647805 (+) | 1419 | WP_041050398.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4325.25 Da Isoelectric Point: 9.3572
>NTDB_id=65785 NY40_RS03260 WP_001217873.1 643364..643477(+) (comB7) [Helicobacter pylori NY40]
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=65785 NY40_RS03260 WP_001217873.1 643364..643477(+) (comB7) [Helicobacter pylori NY40]
ATGAGAATTTTTTTTGTTATTATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGAATTTTTTTTGTTATTATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
100 |
100 |
1 |