Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MJ023_RS23835 Genome accession   NZ_CP092461
Coordinates   4951472..4952995 (+) Length   507 a.a.
NCBI ID   WP_197788950.1    Uniprot ID   -
Organism   Serratia marcescens strain RH10     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4946472..4957995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ023_RS23810 (MJ023_004726) - 4946673..4947599 (-) 927 WP_243810706.1 branched-chain amino acid transaminase -
  MJ023_RS23815 (MJ023_004727) ilvM 4947623..4947880 (-) 258 WP_004929955.1 acetolactate synthase 2 small subunit -
  MJ023_RS23820 (MJ023_004728) ilvG 4947877..4949523 (-) 1647 WP_048795603.1 acetolactate synthase 2 catalytic subunit -
  MJ023_RS23825 (MJ023_004729) ilvL 4949666..4949764 (-) 99 WP_013814970.1 ilv operon leader peptide -
  MJ023_RS23830 (MJ023_004730) - 4949898..4951130 (-) 1233 WP_004929950.1 MFS transporter -
  MJ023_RS23835 (MJ023_004731) comM 4951472..4952995 (+) 1524 WP_197788950.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MJ023_RS23840 (MJ023_004732) - 4953023..4953361 (-) 339 WP_004929946.1 DUF413 domain-containing protein -
  MJ023_RS23845 (MJ023_004733) hdfR 4953481..4954308 (+) 828 WP_028128092.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54508.65 Da        Isoelectric Point: 7.4276

>NTDB_id=657802 MJ023_RS23835 WP_197788950.1 4951472..4952995(+) (comM) [Serratia marcescens strain RH10]
MSLALIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINSGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGSLRAVRGAIPAALAAADAGRQLILSTDNAAEVGLIAQSHSHTAQHL
LEVCAFLLGQGELPVAATPPDADNAYENADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
AEALESLAIASLQHHIPAALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPARVQLIAAMNPSPTGHYQGLHNRASPQQVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSHRKAH
GESSEQVRKRVQQARARQLERAGKVNALLSNREVERDCVLQAADAEFLEATLNTLGLSVRAWQRILKVARTLADLAGDAE
LDRRHLSEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=657802 MJ023_RS23835 WP_197788950.1 4951472..4952995(+) (comM) [Serratia marcescens strain RH10]
ATGTCACTGGCGTTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCCGTAACGGTGGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTCGGCCTGCCGGAAACCACGGTAAAAGAGGCGCGCGATCGGGTGCGCAGCGCCCTGA
TCAACAGCGGTTTCACCTTTCCCGCCCGGCGCATCACCGTCAATTTGGCGCCCGCCGATCTGCCGAAAGAAGGCGGGCGT
TACGATCTGCCGATAGCGCTGGCGATCCTCGCCGCCTCCGAGCAATTGCCCCTCGCGCCGTTGGCGCGCTACGAGTTTCT
TGGCGAGCTCGCGCTGTCTGGCTCACTGCGCGCGGTCAGGGGAGCGATCCCGGCGGCACTGGCGGCGGCTGATGCCGGGC
GGCAACTGATCCTCTCGACGGACAACGCCGCCGAAGTCGGCCTGATCGCGCAGTCGCACTCCCATACCGCCCAACACCTG
CTGGAAGTCTGCGCTTTTTTGCTCGGCCAAGGCGAACTGCCGGTAGCGGCCACGCCCCCCGATGCGGACAACGCGTACGA
AAACGCCGACCTGCGCGACATCATCGGTCAGGAACAGGCCAAGCGGGCATTAGAGATCGCCGCCGCCGGCGGGCATAACC
TGCTGTTGATTGGGCCACCGGGCACCGGTAAAACCATGCTGGCCAGCCGTCTCACGGGCTTGCTGCCGCCGCTGACGGAG
GCTGAGGCGCTGGAAAGCCTGGCGATCGCCAGCTTGCAGCATCACATTCCCGCCGCGCTACCATGGCGCCAGAGGCCGTT
TCGCGCGCCGCACCACAGCGCCTCGATGGCGGCATTGGTCGGCGGCGGCTCACTGCCGCGACCGGGCGAGATCTCGATGG
CGCATAACGGCGTGCTGTTTCTGGATGAACTGCCGGAATTCGAGCGTAAGGTACTGGATGCGCTGCGTGAGCCGTTGGAA
TCCGGCGAGATCGTGATTTCACGCGCCAACGCCAAGGTCTGTTTCCCCGCCAGGGTGCAACTGATCGCGGCAATGAACCC
CAGCCCGACAGGGCATTATCAGGGGTTGCACAATCGCGCCTCACCGCAGCAGGTGTTGCGCTATCTGGCCCGGCTGTCAG
GGCCTTTTCTCGACCGTTTCGATCTGTCTATCGAAGTGCCGTTGTTGCCGCCGGGTACGCTCAGTCATCGGAAAGCTCAT
GGAGAAAGCAGCGAACAAGTACGGAAAAGGGTGCAGCAGGCACGCGCCCGGCAGCTCGAACGCGCCGGTAAAGTCAACGC
GCTGTTGAGCAACCGTGAAGTGGAACGAGATTGCGTTTTGCAGGCGGCAGACGCTGAGTTTTTGGAAGCGACATTAAACA
CGCTGGGGTTATCGGTCCGCGCCTGGCAGCGCATCTTGAAAGTGGCGCGCACGCTGGCGGATTTGGCGGGAGATGCTGAG
CTCGACAGGCGCCATCTCAGCGAAGCGCTGGGCTATCGCAGTATGGACCGTCTGCTGTTACAACTGCATCGCAGTCTGGA
ATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.81

99.803

0.657
  comM Glaesserella parasuis strain SC1401

65.422

100

0.657
  comM Vibrio cholerae strain A1552

65.936

99.014

0.653
  comM Vibrio campbellii strain DS40M4

64.542

99.014

0.639
  comM Legionella pneumophila str. Paris

51.503

98.422

0.507
  comM Legionella pneumophila strain ERS1305867

51.503

98.422

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.079

100

0.452