Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FXN80_RS21570 Genome accession   NZ_CP092460
Coordinates   4862883..4864409 (+) Length   508 a.a.
NCBI ID   WP_038920528.1    Uniprot ID   -
Organism   Dickeya fangzhongdai strain AP6     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4857883..4869409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN80_RS21545 (FXN80_21545) ilvE 4858074..4859000 (-) 927 WP_038920522.1 branched-chain-amino-acid transaminase -
  FXN80_RS21550 (FXN80_21550) ilvM 4859025..4859282 (-) 258 WP_038920524.1 acetolactate synthase 2 small subunit -
  FXN80_RS21555 (FXN80_21555) ilvG 4859300..4860946 (-) 1647 WP_038920525.1 acetolactate synthase 2 catalytic subunit -
  FXN80_RS21560 (FXN80_21560) ilvL 4861086..4861184 (-) 99 WP_071526243.1 ilv operon leader peptide -
  FXN80_RS21565 (FXN80_21565) - 4861324..4862538 (-) 1215 WP_161131106.1 MFS transporter -
  FXN80_RS21570 (FXN80_21570) comM 4862883..4864409 (+) 1527 WP_038920528.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FXN80_RS21575 (FXN80_21575) - 4864472..4864810 (-) 339 WP_033569495.1 DUF413 domain-containing protein -
  FXN80_RS21580 (FXN80_21580) hdfR 4864930..4865754 (+) 825 WP_038920529.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55458.00 Da        Isoelectric Point: 7.4034

>NTDB_id=657779 FXN80_RS21570 WP_038920528.1 4862883..4864409(+) (comM) [Dickeya fangzhongdai strain AP6]
MTLAVTYTRATIGMQAPEVSIEVHISNGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIAGEKLAQYEFLGELGLSGSLRGVHGAIPAAMEAQKAGRGLILPEDNKMEITLVPHGDTLLANHL
LQVCAFLQGETPLLRGSDITSETPAHTPIADLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLPGLLPPLD
DEEALESAAINSLIDIQPSLSQWRNRPFRSPHHTASITALVGGGVLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIVISRTRAKVCYPARFQLVAAMNPSPSGHYQGIHNRMPAQQILRYLNRLSGPFLDRFDLSIEVPLLPPGILRQQTR
IGEDSATVRERVFEARRRQLARIGRINAHMKSDDIACHCRLKSEDAAYLEEVMSKLGLSVRAWHRILKVSRTIADLGGED
QIHRTHLSEALSYRCMDRLLIQLHKSLA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=657779 FXN80_RS21570 WP_038920528.1 4862883..4864409(+) (comM) [Dickeya fangzhongdai strain AP6]
ATGACACTGGCTGTGACCTACACGCGAGCCACCATCGGTATGCAGGCGCCGGAAGTTTCGATTGAAGTGCATATCAGTAA
TGGCCTGCCCGCACTGACACTGGTCGGCTTACCGGAAACCACGGTCAAGGAGGCACGAGATCGGGTGCGTAGCGCTCTGA
TCAACTGTGGCTTCACCTTTCCCGCCAAGCGGATTACCGTCAACCTGGCGCCTGCGGACCTACCGAAAGAAGGGGGACGA
TATGACCTCCCCATCGCCCTGGCCATTCTGGCAGCCTCAGAACAGATTGCCGGCGAGAAACTTGCTCAGTATGAGTTCCT
TGGCGAACTCGGGCTGTCGGGCAGCCTGAGAGGCGTTCATGGCGCTATTCCGGCGGCGATGGAAGCACAAAAAGCAGGCC
GGGGGCTGATTCTGCCGGAAGACAACAAAATGGAAATTACTCTGGTTCCACATGGCGATACATTGCTGGCTAATCACCTG
CTGCAGGTCTGCGCCTTTTTGCAAGGCGAAACGCCGCTGCTGCGTGGCAGCGATATTACGTCTGAAACGCCGGCCCATAC
GCCGATAGCGGACCTGAAGGACATCATCGGTCAGGAACAAGCCAAACGCGCGCTGGAAATTGCGGCGGCGGGCGGACATA
ACCTGCTGTTGCTCGGCCCGCCGGGCACCGGGAAAACCATGCTGGCCAGCCGTCTACCCGGTTTGTTGCCGCCGCTTGAT
GATGAGGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTGATTGATATTCAGCCGAGCCTGTCGCAATGGCGTAACCGGCC
GTTTCGTTCGCCTCACCATACCGCATCCATTACTGCGCTGGTCGGCGGCGGCGTACTGCCCAAACCTGGCGAGATCTCGC
TGGCGCATAATGGCGTGTTATTTCTGGATGAGTTGCCGGAATTTGAACGACGGGTACTGGACTCGCTGCGGGAACCGCTG
GAATCAGGCGAAATCGTGATTTCCCGTACTCGCGCCAAAGTCTGCTATCCTGCCCGTTTTCAGTTGGTGGCCGCAATGAA
TCCCAGTCCATCAGGTCACTATCAGGGCATCCACAATCGCATGCCGGCACAGCAAATTCTGCGTTACCTCAACCGGCTAT
CCGGTCCATTTCTGGATCGCTTTGATTTATCCATTGAGGTGCCATTACTGCCCCCCGGTATTCTTCGCCAGCAAACACGC
ATTGGCGAGGACAGCGCAACCGTGCGGGAACGGGTATTTGAAGCCAGAAGGCGGCAGTTAGCCCGTATCGGCAGAATCAA
CGCACACATGAAATCGGATGACATCGCCTGTCACTGTCGGTTGAAAAGCGAGGATGCGGCGTACCTGGAAGAAGTGATGA
GCAAATTAGGGCTATCGGTCAGAGCCTGGCACCGGATACTGAAAGTCTCGCGCACGATTGCCGACCTGGGAGGAGAAGAT
CAGATTCATCGTACTCATTTGTCGGAAGCGCTCAGCTATCGTTGTATGGATCGTCTGCTAATTCAGTTGCACAAGAGCCT
GGCATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.636

99.606

0.634
  comM Glaesserella parasuis strain SC1401

63.314

99.803

0.632
  comM Vibrio cholerae strain A1552

62.253

99.606

0.62
  comM Vibrio campbellii strain DS40M4

61.905

99.213

0.614
  comM Legionella pneumophila str. Paris

51.594

98.819

0.51
  comM Legionella pneumophila strain ERS1305867

51.594

98.819

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.351

99.803

0.463