Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   MJX77_RS07105 Genome accession   NZ_CP092454
Coordinates   1495700..1496161 (+) Length   153 a.a.
NCBI ID   WP_252061032.1    Uniprot ID   -
Organism   Acinetobacter sp. AHP123     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1490700..1501161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJX77_RS07085 - 1492081..1492968 (+) 888 WP_013196702.1 metal-dependent hydrolase -
  MJX77_RS07090 - 1493099..1493689 (+) 591 WP_252061027.1 LemA family protein -
  MJX77_RS07095 - 1493714..1494796 (+) 1083 WP_252061030.1 TPM domain-containing protein -
  MJX77_RS07100 - 1494790..1495350 (+) 561 WP_107880561.1 TPM domain-containing protein -
  MJX77_RS07105 pilA 1495700..1496161 (+) 462 WP_252061032.1 pilin Machinery gene
  MJX77_RS07110 - 1496221..1497531 (+) 1311 WP_252061034.1 O-antigen ligase family protein -
  MJX77_RS07115 - 1497643..1499271 (+) 1629 WP_252061036.1 O-antigen ligase family protein -
  MJX77_RS07120 bfr 1499314..1499778 (-) 465 WP_000678123.1 bacterioferritin -
  MJX77_RS07125 - 1500024..1500218 (-) 195 WP_004789790.1 bacterioferritin-associated ferredoxin -
  MJX77_RS07130 - 1500438..1500821 (-) 384 WP_004789789.1 RidA family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 15479.71 Da        Isoelectric Point: 8.4553

>NTDB_id=657726 MJX77_RS07105 WP_252061032.1 1495700..1496161(+) (pilA) [Acinetobacter sp. AHP123]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYIAKSQASEPLTLADGLKTNIQTNLQSNSCFANGATAAVAGTDTVTGK
YGTATITTISGTAAANNLVCGITYTFKTTGVSSKIAAKVLALQTNDNGVLSKAASGTTIADKYLPNSLTVAGS

Nucleotide


Download         Length: 462 bp        

>NTDB_id=657726 MJX77_RS07105 WP_252061032.1 1495700..1496161(+) (pilA) [Acinetobacter sp. AHP123]
ATGAATGCACAAAAAGGTTTTACATTAATTGAACTTATGATCGTGGTTGCGATTATTGGTATTTTGGCGGCAATTGCGAT
TCCTGCTTATCAGGATTATATTGCTAAATCTCAAGCTTCAGAGCCACTGACTCTTGCTGATGGTTTGAAAACAAATATTC
AAACTAATCTTCAAAGCAATTCTTGTTTTGCCAATGGTGCGACGGCAGCTGTAGCTGGGACGGATACTGTAACAGGTAAA
TATGGTACAGCTACTATTACGACTATAAGCGGTACTGCAGCGGCAAATAACCTCGTATGTGGTATTACCTATACATTTAA
AACTACGGGTGTTTCAAGTAAAATTGCTGCTAAAGTTCTTGCTCTGCAAACTAATGATAATGGTGTTTTAAGTAAAGCAG
CTTCTGGTACAACTATTGCTGATAAATATTTACCTAACTCATTAACTGTTGCTGGTTCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter nosocomialis M2

60.135

96.732

0.582
  pilA2 Legionella pneumophila str. Paris

41.667

94.118

0.392
  pilE Neisseria gonorrhoeae MS11

36.81

100

0.392
  pilA Acinetobacter baumannii strain A118

38.562

100

0.386
  pilA2 Legionella pneumophila strain ERS1305867

40.972

94.118

0.386