NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	MI302_RS11055	Genome accession	NZ_CP092445
Coordinates	1941807..1943291 (+)	Length	494 a.a.
NCBI ID	WP_239725811.1	Uniprot ID	-
Organism	Thermus sp. NEB1569
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1936807..1948291

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MI302_RS11030 (MI302_11030)	-	1936882..1937772 (+)	891	WP_239725808.1	DMT family transporter	-
MI302_RS11035 (MI302_11035)	-	1937769..1938581 (+)	813	WP_015716143.1	EamA family transporter	-
MI302_RS11040 (MI302_11040)	-	1938583..1939725 (+)	1143	WP_239725809.1	nitrate/nitrite transporter	-
MI302_RS11045 (MI302_11045)	-	1939689..1940738 (-)	1050	WP_239725810.1	Fic family protein	-
MI302_RS11050 (MI302_11050)	-	1940825..1941670 (+)	846	WP_038032087.1	transposase	-
MI302_RS11055 (MI302_11055)	comM	1941807..1943291 (+)	1485	WP_239725811.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
MI302_RS11060 (MI302_11060)	mgsA	1943288..1943665 (-)	378	WP_239725812.1	methylglyoxal synthase	-
MI302_RS11065 (MI302_11065)	-	1943689..1944015 (+)	327	WP_026328946.1	nucleotide pyrophosphohydrolase	-
MI302_RS11070 (MI302_11070)	-	1944017..1944922 (+)	906	WP_239725813.1	ABC transporter ATP-binding protein	-
MI302_RS11075 (MI302_11075)	-	1944915..1945667 (+)	753	WP_239725814.1	ABC transporter permease	-
MI302_RS11080 (MI302_11080)	-	1945657..1946733 (+)	1077	WP_239725815.1	YbfB/YjiJ family MFS transporter	-
MI302_RS11085 (MI302_11085)	-	1946721..1948256 (-)	1536	WP_239725816.1	carboxypeptidase M32	-

Sequence

Protein

Download Length: 494 a.a. Molecular weight: 52778.92 Da Isoelectric Point: 7.4811

                                >NTDB_id=657535 MI302_RS11055 WP_239725811.1 1941807..1943291(+) (comM) [Thermus sp. NEB1569]

MLSQVRSYTLFGLDAVPVTVEVDVSPGLPSYALVGLPDKAVEESRERVRAALKNSGFPYPQARVVVNLAPAELRKEGSHF

DLPIALGLLAAQGVVPLEALAGLAVAGELGLDGALRPVPGAVNLALGALGEGKKLLLPLESAKEAALVEGVEVYGAESLL

QAVAYLRGEEEPRRVEPDDPVAALEALDLRDVKGQAKAKRALEIAAAGYHHLLMVGSPGSGKTMLARRLPFLLPPLSQEA

ALEVSRIHSAAGQILKGLVRTPPFRAPHHTVSYAGLIGGGAIPKPGEVSLAHRGVLFLDEFPEFSRDALEALRQPLEDGV

VTVSRARASLTFPARFLLVAAMNPCPCGWYGDPERACTCTPASRQRYVGKISGPLLDRFDLVVEVPRLTPAELARAPEGE

GTEAVQERVLRARERMLARQGRPNGELAGKALREHVRLTSGAENLLQAAAKRMLLSARSYDRLLRVARTIADLQGAESVE

ENHVAEALAYRKTL

Nucleotide

Download Length: 1485 bp

                                >NTDB_id=657535 MI302_RS11055 WP_239725811.1 1941807..1943291(+) (comM) [Thermus sp. NEB1569]

ATGCTATCCCAGGTGCGGAGCTATACCCTCTTCGGCCTGGACGCGGTTCCCGTCACCGTGGAGGTGGATGTCAGCCCCGG

GCTTCCCAGCTACGCCCTGGTGGGGTTGCCGGACAAGGCGGTGGAGGAAAGCCGGGAGCGGGTCCGGGCCGCTCTGAAGA

ACTCGGGCTTCCCCTACCCCCAGGCCCGGGTGGTGGTGAACCTGGCCCCGGCGGAACTCCGTAAGGAAGGAAGCCACTTT

GACCTGCCCATCGCCTTGGGGCTTCTGGCCGCCCAAGGGGTGGTGCCCTTGGAGGCCCTTGCGGGCCTGGCGGTGGCCGG

GGAGCTGGGCCTGGATGGCGCCTTGCGCCCGGTGCCCGGGGCGGTGAACCTGGCTTTGGGGGCCTTGGGCGAAGGGAAAA

AGCTCCTCCTGCCCCTGGAAAGCGCCAAGGAGGCCGCCTTGGTGGAGGGGGTGGAGGTCTACGGGGCGGAAAGCCTCCTG

CAGGCGGTGGCCTACCTGAGGGGAGAAGAGGAGCCCAGAAGGGTGGAACCCGACGATCCCGTGGCCGCCCTGGAGGCTTT

GGACCTCCGGGACGTGAAGGGCCAGGCCAAGGCCAAAAGGGCCCTGGAGATCGCCGCCGCTGGTTACCACCACCTCCTTA

TGGTGGGAAGCCCGGGCTCGGGAAAGACCATGCTGGCCAGGCGCCTTCCCTTTCTGCTTCCCCCTCTGAGCCAGGAGGCC

GCCCTCGAGGTAAGCCGCATCCACTCCGCCGCCGGGCAGATCCTTAAAGGCCTGGTGCGCACGCCCCCCTTCCGCGCCCC

CCACCACACGGTGAGCTACGCGGGCCTCATCGGGGGCGGGGCCATCCCCAAGCCGGGGGAGGTTTCCCTGGCCCACCGGG

GGGTGCTTTTCCTGGACGAGTTCCCCGAGTTTTCCCGGGATGCCCTGGAGGCCCTCCGCCAGCCCCTCGAGGACGGGGTG

GTGACCGTCTCCCGGGCCAGGGCCAGCCTCACCTTCCCCGCCCGCTTCCTCCTGGTGGCGGCCATGAACCCCTGCCCCTG

CGGCTGGTACGGGGACCCGGAAAGGGCCTGCACCTGCACCCCGGCAAGCCGCCAGCGCTACGTGGGGAAGATCTCTGGAC

CCCTTCTGGACCGGTTTGACCTGGTGGTGGAGGTGCCCCGCTTAACCCCAGCCGAGCTCGCCCGCGCCCCCGAAGGGGAA

GGCACCGAGGCTGTGCAGGAAAGGGTCCTAAGGGCCCGGGAGAGGATGCTCGCCCGGCAGGGCAGGCCCAACGGGGAGCT

TGCGGGAAAGGCCCTGAGGGAGCACGTGCGCTTAACCTCGGGGGCGGAAAACCTCCTCCAGGCGGCGGCCAAGCGGATGC

TCCTTTCCGCCAGGAGCTACGACCGCCTCCTCCGGGTAGCCCGCACCATCGCCGACCTGCAGGGAGCGGAGAGCGTGGAG

GAAAACCACGTGGCCGAGGCCTTGGCCTACCGCAAGACTCTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-139)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	48.687	100	0.488
comM	Haemophilus influenzae Rd KW20	46.185	100	0.466
comM	Vibrio campbellii strain DS40M4	46.356	100	0.464
comM	Glaesserella parasuis strain SC1401	45.783	100	0.462
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	44.732	100	0.455
comM	Legionella pneumophila str. Paris	45.07	100	0.453
comM	Legionella pneumophila strain ERS1305867	45.07	100	0.453

Detailed information NTG0657535