Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MJO52_RS00945 Genome accession   NZ_CP092418
Coordinates   201210..202706 (-) Length   498 a.a.
NCBI ID   WP_252084142.1    Uniprot ID   -
Organism   Microbulbifer variabilis strain SCSIO 43006     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 196210..207706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJO52_RS00915 (MJO52_00915) - 196548..197117 (+) 570 WP_252084136.1 GNAT family N-acetyltransferase -
  MJO52_RS00920 (MJO52_00920) - 197567..198142 (+) 576 WP_252084137.1 GNAT family N-acetyltransferase -
  MJO52_RS00925 (MJO52_00925) - 198263..199231 (+) 969 WP_252084138.1 hypothetical protein -
  MJO52_RS00930 (MJO52_00930) bla 199231..200103 (+) 873 WP_252084139.1 subclass B3 metallo-beta-lactamase -
  MJO52_RS00935 (MJO52_00935) - 200330..200773 (-) 444 WP_252084140.1 MarR family transcriptional regulator -
  MJO52_RS00940 (MJO52_00940) - 200773..201060 (-) 288 WP_252084141.1 putative quinol monooxygenase -
  MJO52_RS00945 (MJO52_00945) comM 201210..202706 (-) 1497 WP_252084142.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MJO52_RS00950 (MJO52_00950) - 202741..202983 (-) 243 WP_252084143.1 accessory factor UbiK family protein -
  MJO52_RS00955 (MJO52_00955) - 203406..204161 (+) 756 WP_252084144.1 TorF family putative porin -
  MJO52_RS00960 (MJO52_00960) - 204211..204549 (+) 339 WP_252084145.1 P-II family nitrogen regulator -
  MJO52_RS00965 (MJO52_00965) - 204604..205863 (+) 1260 WP_252084146.1 ammonium transporter -
  MJO52_RS00970 (MJO52_00970) - 205950..206288 (+) 339 WP_152450594.1 P-II family nitrogen regulator -
  MJO52_RS00975 (MJO52_00975) - 206661..206885 (+) 225 WP_252084147.1 hypothetical protein -
  MJO52_RS00980 (MJO52_00980) - 206964..207701 (-) 738 WP_252084148.1 DUF484 family protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53685.25 Da        Isoelectric Point: 8.2086

>NTDB_id=657313 MJO52_RS00945 WP_252084142.1 201210..202706(-) (comM) [Microbulbifer variabilis strain SCSIO 43006]
MSLSVSYTRAQLGVNAPLVTVETHLANGLPAFHIVGLPEAAVRESRDRVRSALINSHFEFPQRRITVNLAPADLPKDGGR
YDLAIAIGILAASGQVPSEPLESYEFIGELALTGGIRQVSGALPAAIASAAAQRLLIVPKENGSEAALAGSEIANANSLL
EVCAELHGREKLPRAEQQLERVITHTADLADVRGQLKARRALEVAAAGGHNLLFYGPPGTGKTMLASRLPGILPPLTSHE
SIEVAAVYSSAGLPHQSHRPFRAPHHSASPTALVGGGSTPRPGEISLAHRGVLFLDEMPEFPRHALEILREPLENGEVRI
SRARAQVTFPAHFQLVAAMNPCPCGYLGETRCRCTPDQIDRYRNKLSGPLLDRIDMQVEVGAMSAIQLQDSPPGESSESV
RERVCNARQQQLLRQGTINSLLKGASLENHCALGDTEKLLLRQSVEKLGLSARSYHRVLKVARTLADLAKQERIGTAQIA
EALAYRNLDRRQASVHTH

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=657313 MJO52_RS00945 WP_252084142.1 201210..202706(-) (comM) [Microbulbifer variabilis strain SCSIO 43006]
GTGAGCCTGTCAGTTAGCTACACCCGTGCCCAGCTGGGTGTTAACGCCCCACTGGTCACCGTTGAGACCCACCTGGCCAA
CGGGCTCCCCGCCTTTCATATCGTGGGCCTGCCCGAAGCTGCCGTGCGCGAGAGCCGCGACCGGGTACGCAGTGCCCTAA
TTAACAGCCACTTTGAATTCCCCCAGCGGCGTATCACCGTTAATTTGGCCCCCGCGGACCTACCTAAAGACGGCGGGCGA
TACGATCTCGCCATCGCTATAGGCATACTCGCCGCCTCCGGCCAAGTGCCTAGTGAGCCCTTGGAAAGCTACGAATTTAT
CGGAGAGCTCGCCCTTACCGGCGGAATACGCCAGGTCAGCGGCGCACTCCCCGCGGCCATCGCCAGTGCTGCCGCTCAAC
GCCTATTAATAGTACCGAAAGAAAACGGCAGCGAAGCCGCCCTGGCTGGCAGCGAAATCGCTAACGCCAACTCGCTTCTT
GAAGTGTGTGCAGAACTGCATGGCCGGGAAAAATTACCCCGCGCCGAGCAGCAATTAGAGCGAGTAATTACACACACCGC
AGACCTCGCTGATGTTCGCGGCCAGCTCAAAGCGAGACGGGCGCTGGAAGTCGCTGCAGCAGGAGGGCACAACCTTTTGT
TCTATGGTCCACCGGGTACAGGCAAGACCATGTTAGCCAGCCGTTTGCCCGGTATATTGCCGCCTCTAACCAGCCATGAA
TCTATAGAAGTGGCGGCTGTGTACTCTAGCGCTGGATTACCCCACCAGAGTCACAGGCCCTTCCGCGCCCCCCACCACAG
CGCCTCCCCAACCGCACTGGTGGGCGGCGGCAGCACACCGCGCCCAGGGGAGATTTCCCTGGCCCACCGCGGGGTCTTAT
TTCTGGATGAAATGCCAGAGTTTCCCCGCCATGCCCTAGAGATATTGCGTGAACCGCTGGAGAATGGCGAGGTGCGTATT
TCCCGCGCCAGAGCGCAAGTTACCTTCCCCGCCCACTTCCAATTAGTGGCCGCGATGAATCCCTGCCCCTGTGGTTATTT
GGGGGAAACTCGTTGCCGCTGTACACCGGACCAGATAGACCGCTACCGCAACAAGCTTTCCGGACCGCTGTTGGACCGTA
TTGATATGCAGGTGGAAGTTGGCGCAATGAGCGCAATACAGTTACAGGATTCTCCTCCCGGTGAGTCATCTGAGAGTGTG
CGTGAGCGAGTCTGTAATGCCCGCCAACAGCAGTTACTGCGACAAGGAACAATCAATAGCTTATTAAAAGGGGCATCGCT
GGAAAACCACTGCGCCCTGGGCGATACCGAAAAACTACTACTGCGACAGTCAGTAGAAAAACTTGGGCTTTCCGCACGCA
GCTATCATCGAGTGCTTAAAGTTGCCCGCACGCTGGCGGACCTCGCCAAACAGGAAAGAATTGGTACGGCACAAATTGCC
GAAGCGTTGGCTTACCGGAATCTAGACAGACGCCAGGCAAGCGTTCATACACATTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-385)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(394-486)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.179

100

0.556
  comM Vibrio campbellii strain DS40M4

54.326

99.799

0.542
  comM Haemophilus influenzae Rd KW20

53.693

100

0.54
  comM Glaesserella parasuis strain SC1401

53.094

100

0.534
  comM Legionella pneumophila str. Paris

50.701

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.701

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.906

100

0.472