Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MJO57_RS08130 Genome accession   NZ_CP092417
Coordinates   1887028..1888551 (+) Length   507 a.a.
NCBI ID   WP_252024362.1    Uniprot ID   -
Organism   Endozoicomonas sp. SCSIO W0465     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1882028..1893551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJO57_RS08110 (MJO57_08080) - 1883097..1884347 (-) 1251 WP_252024341.1 ammonium transporter -
  MJO57_RS08115 (MJO57_08085) glnK 1884521..1884859 (-) 339 WP_252024354.1 P-II family nitrogen regulator -
  MJO57_RS08120 (MJO57_08090) - 1885356..1886468 (+) 1113 WP_252024356.1 MBL fold metallo-hydrolase -
  MJO57_RS08125 (MJO57_08095) - 1886618..1886914 (+) 297 WP_252024359.1 accessory factor UbiK family protein -
  MJO57_RS08130 (MJO57_08100) comM 1887028..1888551 (+) 1524 WP_252024362.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MJO57_RS08135 (MJO57_08105) - 1888744..1891014 (-) 2271 WP_252024364.1 hypothetical protein -
  MJO57_RS08140 (MJO57_08110) - 1891689..1892729 (+) 1041 WP_252024367.1 IS1595 family transposase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55035.27 Da        Isoelectric Point: 8.2908

>NTDB_id=657290 MJO57_RS08130 WP_252024362.1 1887028..1888551(+) (comM) [Endozoicomonas sp. SCSIO W0465]
MPSTLAQVYTRANQGIRAPSVSVEVHLSQGLPCLNIVGLPEAAVRESKDRVRSALINSGYEFPDGRITVNLAPADLPKEG
GRFDLPIALGILVASGQLPGKTLESKEFLGELALSGHLRPVRAILPASLACKAMNRTLILPEQNASVAAMVSKVTIIGTR
SLAEVCAYLQEKTDIEPAKPDPHVGRTNYPDLSDVRGQEQAKRALLIAATGCHHLLLFGPPGTGKTMLASRLPGLLPPLT
ETEALDVAAIHSLTSSSMDTIWQRPFRTPHHSSSSVSLVGGGSIPQPGEVSFAHHGVLFLDEMPEFARAALEILREPLEN
GEVVITRAKGQECFPARFQLVGAMNPCPCGYLGDSQRTCRCSPDQIRRYRNKLSGPLLDRIDLQIEVPSQTIQTILEPAV
QNNHSKETGSEKLRDMVIKARRIQQARQGKINCQLSSRELFEVCALGEKEKGLIARASEQLHISTRGLHRVLRVARTIAD
LADSTSVLSPHLGEALQYRQLDRQSVA

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=657290 MJO57_RS08130 WP_252024362.1 1887028..1888551(+) (comM) [Endozoicomonas sp. SCSIO W0465]
ATGCCTTCAACGCTGGCCCAGGTTTACACTCGGGCAAATCAGGGCATACGTGCCCCATCGGTTTCAGTGGAAGTTCATCT
TTCCCAGGGACTGCCCTGTTTAAATATTGTCGGTTTACCAGAAGCCGCTGTCCGGGAAAGCAAGGATCGTGTTCGCAGTG
CCCTTATTAACAGTGGTTATGAATTTCCTGATGGCAGAATTACGGTCAACCTTGCCCCGGCAGACCTGCCAAAAGAAGGT
GGACGTTTTGATCTGCCGATTGCGCTGGGCATTCTGGTGGCGTCAGGGCAGCTGCCGGGCAAGACTCTGGAAAGTAAAGA
GTTCCTTGGTGAGCTGGCGCTTTCTGGTCACCTTCGTCCAGTCAGGGCGATTCTTCCTGCCTCGTTAGCCTGCAAAGCCA
TGAACAGGACGTTGATTCTTCCTGAACAAAATGCGTCTGTTGCTGCCATGGTCAGCAAGGTCACTATTATCGGCACACGA
AGTCTTGCAGAAGTTTGCGCTTACCTGCAGGAAAAGACTGATATTGAACCGGCAAAACCAGACCCGCATGTTGGCAGGAC
AAATTATCCAGATCTGTCCGATGTACGAGGGCAGGAGCAAGCCAAACGAGCGTTGCTGATTGCAGCTACCGGTTGTCACC
ATCTGCTGCTTTTTGGTCCACCCGGTACCGGAAAAACCATGTTGGCCAGCCGTCTTCCCGGCTTGCTGCCTCCGCTGACA
GAGACTGAAGCTCTTGATGTTGCCGCTATACACTCACTCACATCCAGCTCCATGGACACTATCTGGCAACGCCCTTTTCG
CACACCTCACCACTCCTCTTCATCCGTTTCCCTGGTGGGAGGTGGCAGCATACCTCAACCGGGGGAGGTCTCTTTTGCAC
ACCACGGCGTGCTCTTCCTGGATGAGATGCCAGAATTTGCCCGCGCTGCCCTGGAAATACTCAGGGAACCCCTGGAAAAT
GGCGAGGTGGTCATCACCCGGGCTAAAGGTCAGGAATGTTTTCCTGCCCGGTTCCAACTGGTAGGCGCAATGAATCCCTG
TCCCTGTGGTTACCTGGGAGACAGCCAGCGAACCTGCCGATGTTCACCTGACCAGATCAGACGCTACCGAAACAAGCTAT
CCGGGCCATTACTGGATCGTATTGATCTTCAGATTGAAGTGCCATCGCAGACTATCCAAACCATTCTGGAGCCTGCTGTT
CAGAACAACCATTCCAAAGAAACCGGTTCTGAAAAGCTCAGAGACATGGTCATCAAAGCCCGAAGAATACAGCAGGCAAG
ACAGGGAAAAATCAATTGCCAACTGTCATCCAGAGAGTTGTTTGAAGTATGCGCACTGGGTGAAAAGGAGAAAGGGCTGA
TCGCCAGAGCGTCGGAGCAACTGCACATCTCAACTCGTGGGCTGCATCGGGTTTTACGGGTGGCCAGAACCATTGCCGAC
CTGGCAGACAGCACCTCGGTGCTGAGCCCGCACTTGGGAGAAGCCCTGCAATATCGGCAACTGGATCGACAGTCTGTTGC
ATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(23-144)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-499)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.789

99.014

0.523
  comM Haemophilus influenzae Rd KW20

51.866

100

0.521
  comM Vibrio campbellii strain DS40M4

51.889

99.211

0.515
  comM Legionella pneumophila str. Paris

52

98.619

0.513
  comM Legionella pneumophila strain ERS1305867

52

98.619

0.513
  comM Glaesserella parasuis strain SC1401

50.884

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.914

100

0.465