Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MID13_RS15485 Genome accession   NZ_CP092384
Coordinates   3420645..3422168 (-) Length   507 a.a.
NCBI ID   WP_239716936.1    Uniprot ID   -
Organism   Vibrio gigantis strain ACE001     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3415645..3427168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID13_RS15460 (MID13_15460) - 3415654..3415917 (+) 264 WP_215408310.1 YihD family protein -
  MID13_RS15465 (MID13_15465) ccoG 3416244..3417662 (+) 1419 WP_086712408.1 cytochrome c oxidase accessory protein CcoG -
  MID13_RS15470 (MID13_15470) - 3417736..3418724 (+) 989 Protein_2932 serine/threonine protein kinase -
  MID13_RS15475 (MID13_15475) - 3418780..3419379 (+) 600 WP_239716934.1 thiol:disulfide interchange protein DsbA/DsbL -
  MID13_RS15480 (MID13_15480) - 3419613..3420569 (+) 957 WP_086712407.1 DUF2860 domain-containing protein -
  MID13_RS15485 (MID13_15485) comM 3420645..3422168 (-) 1524 WP_239716936.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MID13_RS15490 (MID13_15490) ilvG 3422641..3424287 (+) 1647 WP_086712405.1 acetolactate synthase 2 catalytic subunit -
  MID13_RS15495 (MID13_15495) ilvM 3424289..3424573 (+) 285 WP_017055442.1 acetolactate synthase 2 small subunit -
  MID13_RS15500 (MID13_15500) - 3424586..3425554 (+) 969 WP_239716938.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55567.75 Da        Isoelectric Point: 7.6193

>NTDB_id=657109 MID13_RS15485 WP_239716936.1 3420645..3422168(-) (comM) [Vibrio gigantis strain ACE001]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASEQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADSIERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADLCGQAQLGLYRTEQHQVDVSELRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVKQARQLMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGNEQ
IEKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=657109 MID13_RS15485 WP_239716936.1 3420645..3422168(-) (comM) [Vibrio gigantis strain ACE001]
ATGGGACTCGCGATAATTCATAGTCGAGCTAGTGTTGGTGTAGAGGCGCCAGAAGTGACGGTTGAGGTGCATATAAGCAA
CGGAATGCCTGGCTTTACGTTGGTGGGTCTGCCTGAAACAACGGTCAAGGAATCTAAAGATCGAGTGAGAAGCGCGATCA
TTAATTCTCGCTTTGAGTTTCCATCGAAAAGAATCACGGTTAATCTCGCTCCAGCAGATTTGCCAAAAGAGGGCGGACGT
TTTGATTTGCCTATTGCGCTAGGAATCTTAGTCGCCTCCGAGCAGCTTCCCACATCCAAGATCGCACAGCATGAATTCAT
CGGTGAGTTGGCGTTGTCAGGAGAGTTGCGCTCAGTAAAGGGCGTGTTACCCGCAACGTTAGCCGCCGATAGTATCGAAC
GATGTTTGGTCGTCCCACACCACAACGGTGATCAGGCGGCGCTGGTGGGCAAGGGAGCTCACAAATCCGCACAAACCTTG
TTGGAGGTTTGTGCGGATTTGTGTGGGCAGGCTCAGCTTGGTCTGTATCGTACCGAGCAACATCAAGTTGATGTGTCTGA
GCTTCGCGACCTGCAAGACATCATCGGCCAACAGCAAGGCAAACGAGCACTAGAGATAGCAGCTGCGGGTAACCATAACC
TACTTTTTCTTGGCCCTCCCGGAACGGGCAAGACCATGTTGGCTTCTCGACTGCGTGACTTATTACCTGAAATGAGTGAT
GACGAAGCGATGGAAACCGCTTCGGTGGCTTCGTTAACGCAACAAGAGATTAATCAATACAACTGGAAACAACGTCCTTT
TCGCGCTCCACATCATTCGAGTTCAATGGCAGCACTGGTAGGTGGTGGCTCAGTACCTCGCCCCGGCGAGATCTCTCTGG
CGCACAATGGCTTATTGTTTCTTGATGAGATGCCCGAGTTTGAGCGCAAGGTGCTCGATTCATTGCGTGAGCCACTGGAG
TCAGGTGAAATCATTATCTCGCGGGTGGCGGGGAAAACTCGTTTCCCTGCGCGCTTTCAATTGGTCGGTGCACTCAACCC
AAGCCCAACAGGTTACTACGAAGGTAATCAAGCAAGAGCCAATCCTCAGATCATATTGCGCTATCTTAATCGATTGTCTG
GGCCGTTACTTGATCGGTTTGATATGTCATTGGAGATTCCATTGCTGCCTAAAGGAATGCTCGCCGAGGGTGGTGACCGC
GGTGAAACTACTCAGGTCGTAAAGCAAAGAGTTAAACAAGCTCGTCAGTTGATGCTATCTCGCAACCATAAATCGAATGC
ACTGTTAGGTAGTCGAGAAATTGAGAAGTATTGCCCACTGCGACGTGAAGATGCCGAGTTTCTGGAAACAGCGCTGCATA
GACTGGGTTTATCGATTCGTGCCTATCATCGAATCATCAAGGTCGCACGTACTATTGCTGATCTGGATGGTAACGAGCAG
ATAGAAAAGAAACACTTATCGGAAGCGCTTGGTTACCGCGCGATGGATAGATTATTGAAGCAACTTACAGCACAAGCTGT
GTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

84.024

100

0.84
  comM Vibrio cholerae strain A1552

83.432

100

0.834
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

63.086

100

0.637
  comM Legionella pneumophila str. Paris

49.698

98.028

0.487
  comM Legionella pneumophila strain ERS1305867

49.698

98.028

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.897

99.803

0.418