Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MID13_RS01705 Genome accession   NZ_CP092384
Coordinates   352366..352923 (+) Length   185 a.a.
NCBI ID   WP_017061342.1    Uniprot ID   -
Organism   Vibrio gigantis strain ACE001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 347366..357923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID13_RS01690 (MID13_01690) uvrA 347429..350260 (-) 2832 WP_239717233.1 excinuclease ABC subunit UvrA -
  MID13_RS01695 (MID13_01695) galU 350411..351283 (-) 873 WP_048618119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  MID13_RS01700 (MID13_01700) qstR 351440..352087 (-) 648 WP_086713492.1 LuxR C-terminal-related transcriptional regulator Regulator
  MID13_RS01705 (MID13_01705) ssb 352366..352923 (+) 558 WP_017061342.1 single-stranded DNA-binding protein Machinery gene
  MID13_RS01710 (MID13_01710) csrD 353085..355100 (+) 2016 WP_239717235.1 RNase E specificity factor CsrD -
  MID13_RS01715 (MID13_01715) - 355103..356545 (+) 1443 WP_239717237.1 MSHA biogenesis protein MshI -
  MID13_RS01720 (MID13_01720) pilO 356545..357192 (+) 648 WP_086773840.1 type 4a pilus biogenesis protein PilO -
  MID13_RS01725 (MID13_01725) - 357185..357514 (+) 330 WP_086713481.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20400.52 Da        Isoelectric Point: 5.2358

>NTDB_id=657074 MID13_RS01705 WP_017061342.1 352366..352923(+) (ssb) [Vibrio gigantis strain ACE001]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGGWGQPQQPQQQQQQYSAPAQQQPKA
PQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=657074 MID13_RS01705 WP_017061342.1 352366..352923(+) (ssb) [Vibrio gigantis strain ACE001]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
TGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAGCAGCGTGAAAAAACAG
AATGGCACCGTGTTGCGCTGTTTGGCAAGCTAGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGCGGTCAAGATCGCTACACAACAGAAGTGGTTGTTCAAGGCTT
CAACGGTGTTATGCAAATGCTTGGCGGCCGTGCTCAAGGTGGTGCTCCTGCTCAAGGTGGTATGGGTAACAACCAACAGC
AAGGTGGTTGGGGTCAACCACAGCAGCCACAACAACAGCAGCAACAATACAGTGCTCCAGCTCAACAGCAGCCGAAAGCA
CCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.72

100

0.822
  ssb Glaesserella parasuis strain SC1401

57.447

100

0.584
  ssb Neisseria meningitidis MC58

47.568

100

0.476
  ssb Neisseria gonorrhoeae MS11

47.568

100

0.476