Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   MID13_RS01700 Genome accession   NZ_CP092384
Coordinates   351440..352087 (-) Length   215 a.a.
NCBI ID   WP_086713492.1    Uniprot ID   A0A5M9N2Q6
Organism   Vibrio gigantis strain ACE001     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 346440..357087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID13_RS01690 (MID13_01690) uvrA 347429..350260 (-) 2832 WP_239717233.1 excinuclease ABC subunit UvrA -
  MID13_RS01695 (MID13_01695) galU 350411..351283 (-) 873 WP_048618119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  MID13_RS01700 (MID13_01700) qstR 351440..352087 (-) 648 WP_086713492.1 LuxR C-terminal-related transcriptional regulator Regulator
  MID13_RS01705 (MID13_01705) ssb 352366..352923 (+) 558 WP_017061342.1 single-stranded DNA-binding protein Machinery gene
  MID13_RS01710 (MID13_01710) csrD 353085..355100 (+) 2016 WP_239717235.1 RNase E specificity factor CsrD -
  MID13_RS01715 (MID13_01715) - 355103..356545 (+) 1443 WP_239717237.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25109.24 Da        Isoelectric Point: 9.2438

>NTDB_id=657073 MID13_RS01700 WP_086713492.1 351440..352087(-) (qstR) [Vibrio gigantis strain ACE001]
MRKSRYARTLHFLCIDPNDTYLHVKEIEKHLSIILYKMTPDELMLVDRKQSNRILLVDYKEVPQLLVICPNLAVMWKNHE
IILFNVPQQLPTSELLTYGVLKGLFYSTEQKDKIARGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=657073 MID13_RS01700 WP_086713492.1 351440..352087(-) (qstR) [Vibrio gigantis strain ACE001]
ATGAGAAAATCACGATACGCTCGCACTTTGCATTTTCTGTGCATCGACCCAAACGACACCTATCTACATGTAAAAGAGAT
AGAAAAGCATTTATCTATTATTCTCTACAAAATGACGCCCGATGAATTAATGCTAGTTGATAGAAAGCAGAGCAATCGGA
TCTTGCTCGTCGATTATAAAGAGGTGCCACAACTACTGGTTATTTGTCCTAACCTGGCTGTTATGTGGAAAAACCATGAG
ATCATCTTATTCAATGTCCCTCAGCAACTTCCAACCTCGGAACTTCTTACCTATGGTGTACTTAAAGGGCTATTTTACAG
CACAGAGCAAAAAGATAAGATTGCTCGTGGTCTTCAAGAAGTCATTGATGGCGATAACTGGCTGCCGAGAAAGGTAACCA
ATCAACTGCTGTTTTATTATCGTAATATGGTCAATACCAACACAACACCGACTAATGTTGATCTCACCATTCGCGAGATC
CAGGTTATTCGTTGCCTTCAGTCAGGGTCATCAAACACGCAAATAGCCGATGACTTATTTATTAGTGAGTTCACGGTCAA
ATCCCACCTTTATCAGATATTCCGTAAGTTAGCGGTCAAAAATAGAGTTCAAGCCATTGCGTGGGCAAACCAGAATCTGC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5M9N2Q6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

53.953

100

0.54
  qstR Vibrio parahaemolyticus RIMD 2210633

53.023

100

0.53
  qstR Vibrio cholerae strain A1552

48.598

99.535

0.484