Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MC269_RS17130 Genome accession   NZ_CP092373
Coordinates   3575575..3576129 (-) Length   184 a.a.
NCBI ID   WP_081140649.1    Uniprot ID   A0A1V9DDM9
Organism   Pantoea sp. Z09     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3570575..3581129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MC269_RS17105 - 3571491..3571631 (+) 141 WP_158083440.1 hypothetical protein -
  MC269_RS17110 - 3571853..3572812 (-) 960 WP_239953138.1 DMT family transporter -
  MC269_RS17115 - 3572887..3573717 (-) 831 WP_081140702.1 AraC family transcriptional regulator -
  MC269_RS17120 - 3573845..3574369 (+) 525 WP_239953139.1 isochorismatase family protein -
  MC269_RS17125 - 3574421..3574849 (-) 429 WP_081140650.1 hypothetical protein -
  MC269_RS17130 ssb 3575575..3576129 (-) 555 WP_081140649.1 single-stranded DNA-binding protein SSB1 Machinery gene
  MC269_RS17135 uvrA 3576356..3579184 (+) 2829 WP_081140648.1 excinuclease ABC subunit UvrA -
  MC269_RS17140 - 3579415..3580479 (+) 1065 WP_239953140.1 NAD(P)-dependent alcohol dehydrogenase -
  MC269_RS17145 - 3580516..3580851 (-) 336 WP_081140646.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19632.55 Da        Isoelectric Point: 5.2358

>NTDB_id=656914 MC269_RS17130 WP_081140649.1 3575575..3576129(-) (ssb) [Pantoea sp. Z09]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVNVGGTMQMLGGRQQGGASAGGAPMGGGQSGGNNNNGWGQPQQPQGGNQFSGGAQSR
PQPQSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=656914 MC269_RS17130 WP_081140649.1 3575575..3576129(-) (ssb) [Pantoea sp. Z09]
ATGGCCAGTCGTGGCGTAAATAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGCTACATGCCGAATGG
TGGCGCGGTTGCCAACATTACGCTGGCCACCTCGGAAAGCTGGCGTGACAAGCAGACCGGTGAAAACAAAGAGATCACCG
AGTGGCACCGCGTGGTGCTGTTCGGCAAGCTGGCGGAAGTGGCCGGCGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGCACGCGCAAATGGCAGGATCAGGGCGGTCAGGATCGCTACACCACCGAAGTGGTGGTGAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGCAGGGCGGCGCCAGCGCAGGCGGCGCGCCGATGGGCGGCGGTCAGAGCG
GCGGCAACAACAACAACGGCTGGGGCCAGCCGCAGCAGCCGCAGGGCGGAAACCAGTTCAGCGGCGGCGCGCAGTCGCGT
CCGCAGCCGCAGAGCGCGCCAGCAAGCAACAACAACGAACCGCCGATGGATTTCGACGACGATATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V9DDM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.892

100

0.723
  ssb Glaesserella parasuis strain SC1401

57.513

100

0.603
  ssb Neisseria meningitidis MC58

45.946

100

0.462
  ssb Neisseria gonorrhoeae MS11

45.946

100

0.462
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.363

98.913

0.37