Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MID01_RS13005 Genome accession   NZ_CP092369
Coordinates   2509485..2509781 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain ZW     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2504485..2514781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID01_RS12960 (MID01_12960) tasA 2504893..2505678 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  MID01_RS12965 (MID01_12965) sipW 2505742..2506314 (-) 573 WP_003246088.1 signal peptidase I -
  MID01_RS12970 (MID01_12970) tapA 2506298..2507059 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  MID01_RS12975 (MID01_12975) yqzG 2507331..2507657 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  MID01_RS12980 (MID01_12980) spoIIT 2507699..2507878 (-) 180 WP_003230176.1 YqzE family protein -
  MID01_RS12985 (MID01_12985) comGG 2507949..2508323 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  MID01_RS12990 (MID01_12990) comGF 2508324..2508707 (-) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  MID01_RS12995 (MID01_12995) comGE 2508733..2509080 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  MID01_RS13000 (MID01_13000) comGD 2509064..2509495 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  MID01_RS13005 (MID01_13005) comGC 2509485..2509781 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  MID01_RS13010 (MID01_13010) comGB 2509795..2510832 (-) 1038 WP_041850016.1 comG operon protein ComGB Machinery gene
  MID01_RS13015 (MID01_13015) comGA 2510819..2511889 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  MID01_RS13020 (MID01_13020) corA 2512300..2513253 (-) 954 WP_029317911.1 magnesium transporter CorA -
  MID01_RS13025 (MID01_13025) yqhB 2513396..2514724 (+) 1329 WP_041850018.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=656858 MID01_RS13005 WP_003230162.1 2509485..2509781(-) (comGC) [Bacillus subtilis strain ZW]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=656858 MID01_RS13005 WP_003230162.1 2509485..2509781(-) (comGC) [Bacillus subtilis strain ZW]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378