Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHU34_RS24265 Genome accession   NZ_CP108235
Coordinates   5401416..5402414 (+) Length   332 a.a.
NCBI ID   WP_020131920.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00080     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5396416..5407414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU34_RS24240 (OHU34_24235) - 5396610..5397257 (+) 648 WP_020131925.1 TetR/AcrR family transcriptional regulator -
  OHU34_RS24245 (OHU34_24240) - 5397506..5399044 (+) 1539 WP_230195456.1 MFS transporter -
  OHU34_RS24250 (OHU34_24245) - 5399058..5399567 (-) 510 WP_142264777.1 MarR family winged helix-turn-helix transcriptional regulator -
  OHU34_RS24255 (OHU34_24250) - 5399829..5400638 (+) 810 WP_230195457.1 class III extradiol ring-cleavage dioxygenase -
  OHU34_RS24260 (OHU34_24255) - 5400691..5401230 (-) 540 WP_142264776.1 GNAT family N-acetyltransferase -
  OHU34_RS24265 (OHU34_24260) rpoS 5401416..5402414 (+) 999 WP_020131920.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OHU34_RS24270 (OHU34_24265) - 5403300..5404004 (+) 705 WP_230195487.1 TetR/AcrR family transcriptional regulator -
  OHU34_RS24275 (OHU34_24270) - 5404001..5405134 (-) 1134 WP_405768280.1 helix-turn-helix transcriptional regulator -
  OHU34_RS24280 (OHU34_24275) - 5405197..5406756 (+) 1560 WP_405768282.1 MFS transporter -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37290.04 Da        Isoelectric Point: 4.9765

>NTDB_id=656857 OHU34_RS24265 WP_020131920.1 5401416..5402414(+) (rpoS) [Streptomyces sp. NBC_00080]
MATRAVARRKSANGETTDAARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFAQQVLDGDEESRSV
ATREELEALVAESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEIATELGSTPERVTDVLDWARDPVSLNMAVDDQGETQF
GDLLEDTSAVSPEQSVMTLLRSEELDGLIDRLEPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=656857 OHU34_RS24265 WP_020131920.1 5401416..5402414(+) (rpoS) [Streptomyces sp. NBC_00080]
ATGGCAACCCGTGCCGTCGCCCGTCGCAAGTCCGCCAACGGCGAGACGACCGACGCGGCCCGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAAATCGCGCGCACACCTCTGCTCGACGCCGCCAAGG
AAGTCGAGCTGTCACAGATCATCGAGGCGGGTGTCTTCGCGCAGCAGGTCCTCGACGGCGACGAGGAGTCGCGGTCGGTC
GCCACGCGCGAAGAACTGGAGGCCCTGGTCGCCGAGAGCGAGCGGGCCAAGGATGTCTTCATCCGCTCCAACCTCCGGTT
GGTCGTCGCGGTGGCCCGCCGCTACCCCCGTAGCGGTCTCCCGCTCCTCGACCTCATCCAGGAGGGCAACGCCGGTCTGG
TCCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACGCGCTCGATAGCGGACCAGTCGCGCACGATCCGCCTGCCCGTCCACCTGGTGGAGGAGCTCGGCCGGATCCGTCGTGT
CCAGCGCGAGTTCAACCGCGAGAACGGCCGTGACCCCGAGCCCGCCGAGATCGCGACCGAGCTCGGCTCGACGCCGGAGC
GCGTCACGGATGTCCTGGACTGGGCCCGGGACCCGGTCTCGCTGAACATGGCGGTCGACGACCAGGGTGAGACCCAGTTC
GGCGACCTGCTGGAGGACACGTCCGCGGTCTCGCCGGAGCAGTCCGTCATGACCCTGCTGCGCAGCGAGGAGCTGGACGG
CCTCATCGACCGTCTCGAGCCGCGCACGGCTTCCATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGCACCC
TGACCGAGGTCGGCAAGGAACACGGTCTGACGCGGGAACGCATCCGCCAGATCGAGAAGCACGCCCTGCTGGAACTGAAG
AAGCTGGCCCGCGACACGGGCTTCGAGGCGGCGGCGTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 region 3 (Sigma70_r3)

(179-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.134

90.06

0.361