Detailed information    

insolico Bioinformatically predicted

Overview


Name   comM   Type   Machinery gene
Locus tag   MIS45_RS03900 Genome accession   NZ_CP092361
Coordinates   767921..769420 (-) Length   499 a.a.
NCBI ID   WP_249451076.1    Uniprot ID   -
Organism   Wielerella bovis strain CCUG 44465     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context


Location: 762921..774420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIS45_RS03875 (MIS45_03875) - 763124..763861 (-) 738 WP_249449301.1 lysophospholipid acyltransferase family protein -
  MIS45_RS03880 (MIS45_03880) map 764053..764829 (-) 777 WP_249451072.1 type I methionyl aminopeptidase -
  MIS45_RS03885 (MIS45_03885) - 765043..765864 (-) 822 WP_249451073.1 undecaprenyl-diphosphate phosphatase -
  MIS45_RS03890 (MIS45_03890) - 765932..766642 (-) 711 WP_249451074.1 thiol:disulfide interchange protein DsbA/DsbL -
  MIS45_RS03895 (MIS45_03895) - 766665..767798 (-) 1134 WP_249451075.1 SPOR domain-containing protein -
  MIS45_RS03900 (MIS45_03900) comM 767921..769420 (-) 1500 WP_249451076.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MIS45_RS03905 (MIS45_03905) - 769431..769694 (-) 264 WP_249443334.1 accessory factor UbiK family protein -
  MIS45_RS03910 (MIS45_03910) metK 769841..771010 (-) 1170 WP_249443336.1 methionine adenosyltransferase -
  MIS45_RS03915 (MIS45_03915) - 771667..772857 (+) 1191 WP_249451077.1 amino acid aminotransferase -
  MIS45_RS03920 (MIS45_03920) nhaC 772980..774362 (+) 1383 WP_249451078.1 Na+/H+ antiporter NhaC -

Sequence


Protein


Download         Length: 499 a.a.        Molecular weight: 53478.42 Da        Isoelectric Point: 7.2818

>NTDB_id=656770 MIS45_RS03900 WP_249451076.1 767921..769420(-) (comM) [Wielerella bovis strain CCUG 44465]
MSFAIVNSRALSGMNAPLVEVEVHLANGLPQFNLVGLPDTEVKESRDRVRAAIIQSGFDFPAQKITVNLAPADLPKESAR
FDLPIAVGILAASAQIAPDALADYEFAGELALSGALRPVRGALAMAWQGKQANRAFMLPQENAAAAAVIGDICVFGASSL
SQVAAHLNGTQPLSPQRPPEFFRQPENTQLPDLRDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLAQRLPSILPPL
SDEELISVWALRSLLPNFSGCLNDARRPFRSPHHSASAAALVGGGSDPKPGEISLAHHGVLFLDELPEFDRKVLEMLREP
LESGEIHISRASRQATYPAQFQLVAAMNPCPCGYLGHPAKPCRCTPDAVQRYRDRISGPLLDRIDLTIEVPALPAADLIN
AQMGEDSATVLQRVQAARTKQLARQGKTNAALNPTELDTLANISPEAKNALGEMLEKLSLSARSFHRILRVARTLADLAG
DEVVTRAHVLRAIGFRRAL

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=656770 MIS45_RS03900 WP_249451076.1 767921..769420(-) (comM) [Wielerella bovis strain CCUG 44465]
ATGAGCTTTGCCATCGTCAATAGCCGCGCATTAAGTGGCATGAACGCGCCCTTGGTGGAAGTGGAAGTCCATCTCGCCAA
CGGTTTGCCACAATTCAATTTGGTCGGTTTACCTGATACCGAAGTGAAGGAAAGCCGCGACCGTGTTCGTGCCGCCATCA
TTCAAAGTGGCTTTGATTTTCCCGCACAAAAAATTACCGTCAATCTTGCGCCAGCCGATTTACCCAAAGAATCCGCTCGT
TTTGATTTACCGATTGCAGTGGGCATTCTCGCCGCATCGGCACAAATCGCGCCCGATGCGTTGGCAGATTATGAGTTTGC
AGGCGAATTGGCATTATCGGGTGCGCTGCGTCCTGTACGGGGCGCGTTGGCAATGGCGTGGCAAGGCAAACAAGCCAATC
GTGCGTTTATGTTGCCGCAGGAAAATGCTGCCGCAGCTGCTGTAATTGGCGACATTTGCGTATTCGGTGCCAGCAGTTTG
AGCCAAGTTGCCGCGCATTTAAATGGCACACAACCTTTGTCGCCACAACGTCCACCCGAATTTTTCAGGCAGCCTGAAAA
CACACAATTACCCGATTTACGCGATGTTAAAGGGCAACACACCGCGCGTTTAGCATTGGAAATTGCTGCGGCAGGCGGAC
ACAGTTTATTGATGATGGGTCCACCGGGGACGGGAAAATCCATGCTCGCGCAACGTTTGCCGTCTATTTTGCCGCCTTTA
TCCGATGAAGAATTGATTTCCGTGTGGGCATTGCGTTCTTTGTTACCGAATTTTTCAGGCTGCCTGAACGATGCACGCCG
CCCGTTTCGCAGTCCACATCATTCCGCCAGCGCAGCCGCATTGGTTGGCGGTGGTTCAGACCCCAAACCTGGGGAAATTT
CTCTAGCGCATCACGGCGTATTATTTTTGGACGAGTTGCCTGAATTTGACCGCAAAGTATTGGAAATGTTGCGCGAACCA
TTGGAAAGTGGCGAAATTCATATTTCACGCGCCAGCCGACAAGCAACTTATCCTGCCCAATTTCAATTGGTTGCGGCGAT
GAATCCCTGTCCATGCGGTTATTTGGGACACCCAGCCAAACCTTGTCGCTGCACGCCCGATGCGGTGCAACGATACCGCG
ACCGCATTTCAGGTCCCTTGCTTGACCGCATTGATTTGACGATTGAAGTGCCTGCGCTACCTGCCGCCGATTTAATCAAC
GCGCAAATGGGCGAAGACAGCGCAACCGTGTTGCAACGTGTTCAGGCTGCCCGCACCAAACAATTGGCGCGACAAGGCAA
AACCAATGCCGCACTCAATCCCACCGAATTGGATACATTGGCAAATATCAGCCCCGAAGCCAAAAATGCACTGGGCGAAA
TGTTGGAAAAATTAAGTTTATCAGCACGAAGTTTTCATCGTATTTTGCGTGTAGCGCGAACATTGGCGGATTTGGCTGGC
GATGAAGTGGTAACACGCGCCCATGTTTTGCGTGCGATTGGATTTCGGCGCGCGTTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.722

99.599

0.535

  comM Vibrio campbellii strain DS40M4

52.495

100

0.527

  comM Glaesserella parasuis strain SC1401

50.797

100

0.511

  comM Haemophilus influenzae Rd KW20

50.501

100

0.505

  comM Legionella pneumophila str. Paris

48.819

100

0.497

  comM Legionella pneumophila strain ERS1305867

48.819

100

0.497

  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.4

100

0.435