Detailed information    

insolico Bioinformatically predicted

Overview


Name   comM   Type   Machinery gene
Locus tag   MIS46_RS03690 Genome accession   NZ_CP092358
Coordinates   724237..725736 (-) Length   499 a.a.
NCBI ID   WP_249443333.1    Uniprot ID   -
Organism   Wielerella bovis strain 09LB414     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context


Location: 719237..730736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIS46_RS03665 (MIS46_03665) - 719472..720206 (-) 735 WP_249443328.1 lysophospholipid acyltransferase family protein -
  MIS46_RS03670 (MIS46_03670) map 720398..721174 (-) 777 WP_249443329.1 type I methionyl aminopeptidase -
  MIS46_RS03675 (MIS46_03675) - 721388..722209 (-) 822 WP_249443330.1 undecaprenyl-diphosphate phosphatase -
  MIS46_RS03680 (MIS46_03680) - 722277..722987 (-) 711 WP_249443331.1 thiol:disulfide interchange protein DsbA/DsbL -
  MIS46_RS03685 (MIS46_03685) - 723010..724122 (-) 1113 WP_249443332.1 SPOR domain-containing protein -
  MIS46_RS03690 (MIS46_03690) comM 724237..725736 (-) 1500 WP_249443333.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MIS46_RS03695 (MIS46_03695) - 725747..726010 (-) 264 WP_249443334.1 accessory factor UbiK family protein -
  MIS46_RS03700 (MIS46_03700) - 726135..726659 (-) 525 WP_249443335.1 hypothetical protein -
  MIS46_RS03705 (MIS46_03705) metK 726753..727922 (-) 1170 WP_249443336.1 methionine adenosyltransferase -
  MIS46_RS03710 (MIS46_03710) - 728164..728376 (-) 213 WP_249443337.1 hypothetical protein -
  MIS46_RS03715 (MIS46_03715) - 728578..729798 (+) 1221 WP_249443338.1 amino acid aminotransferase -

Sequence


Protein


Download         Length: 499 a.a.        Molecular weight: 53589.55 Da        Isoelectric Point: 7.5354

>NTDB_id=656692 MIS46_RS03690 WP_249443333.1 724237..725736(-) (comM) [Wielerella bovis strain 09LB414]
MSFAVVNSRALSGMNAPLVEVEIHLANGLPQFNLVGLPDTEVKESRDRVRAAIIQSGFDFPAQKITVNLAPADLPKESAR
FDLPIAVGILAASAQIVPDVLADYEFAGELALSGALRPVRGALAMAWQGKQANRAFMLPQENAAAAAVIGDIRVFGASSL
SQVAAHLNGTQPLSPQRPPEFFRQPENTQLPDLRDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLAQRLPSILPPL
SDDELISVWALRSLLPNFSGCLNDARRPFRSPHHSASAAALVGGGSDPKPGEISLAHHGVLFLDELPEFDRKVLEMLREP
LESGEIHISRASRQATYPAQFQLVAAMNPCPCGYLGHPAKPCRCTPDAVQRYRDRISGPLLDRIDLTIEVPALPAADLVN
AQMGEDSATVLQRVQAARAKQLTRQGKTNATLNPTELDTLANISPEAKNALGEMLEKLSLSARSFHRILRVARTLADLAG
DEVVTRAHVLRAIGFRRAL

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=656692 MIS46_RS03690 WP_249443333.1 724237..725736(-) (comM) [Wielerella bovis strain 09LB414]
ATGAGCTTTGCTGTCGTCAATAGCCGCGCACTAAGCGGCATGAACGCGCCCTTGGTGGAAGTGGAAATCCATCTTGCCAA
CGGTTTGCCACAATTCAATCTGGTCGGCTTACCCGATACCGAAGTGAAGGAAAGCCGCGACCGTGTTCGTGCTGCCATCA
TTCAAAGTGGCTTTGATTTTCCCGCGCAAAAAATCACCGTCAATCTTGCGCCAGCCGATTTACCCAAAGAATCCGCTCGT
TTTGATTTGCCGATTGCGGTGGGTATTCTCGCCGCATCGGCACAAATTGTGCCTGATGTGTTGGCAGATTATGAGTTTGC
AGGTGAATTAGCATTATCAGGTGCGCTACGTCCCGTGCGTGGTGCATTAGCAATGGCGTGGCAAGGAAAACAAGCCAATC
GTGCATTTATGTTGCCACAGGAAAATGCTGCCGCAGCCGCTGTGATTGGCGACATTCGCGTATTTGGTGCCAGCAGTTTG
AGCCAAGTTGCCGCGCATTTAAATGGCACACAACCTTTGTCGCCACAACGTCCACCCGAATTTTTCAGGCAGCCTGAAAA
CACGCAATTACCCGATTTACGCGATGTTAAAGGGCAACACACCGCGCGTTTAGCATTGGAAATTGCTGCAGCAGGCGGAC
ACAGTTTATTGATGATGGGTCCACCGGGGACGGGAAAATCCATGCTTGCGCAACGTTTGCCGTCTATTTTGCCACCTTTA
TCCGATGACGAATTGATTTCCGTGTGGGCATTGCGTTCTTTGTTACCGAATTTTTCAGGCTGCCTGAACGATGCACGCCG
CCCGTTTCGCAGTCCACATCATTCCGCCAGCGCAGCCGCATTGGTTGGCGGTGGTTCTGACCCCAAACCTGGGGAAATTT
CTCTGGCGCATCACGGCGTATTATTTTTGGACGAGTTGCCCGAATTTGACCGCAAAGTATTGGAAATGTTGCGCGAACCA
TTGGAAAGTGGCGAAATTCATATTTCACGCGCCAGCCGACAAGCGACTTATCCTGCCCAATTTCAACTGGTTGCAGCGAT
GAATCCTTGTCCATGCGGTTATTTGGGACACCCAGCCAAACCCTGTCGCTGCACGCCCGATGCGGTGCAACGATACCGCG
ACCGCATTTCAGGTCCATTGCTTGACCGCATTGATTTGACAATTGAAGTGCCTGCGCTACCTGCCGCCGATTTGGTCAAC
GCACAAATGGGCGAAGACAGCGCGACCGTATTGCAACGCGTTCAGGCTGCCCGTGCCAAACAATTGACGCGACAAGGTAA
AACCAATGCCACACTCAATCCCACCGAATTGGACACATTGGCCAATATCAGCCCCGAAGCCAAAAATGCATTGGGCGAAA
TGTTGGAAAAATTAAGTTTATCAGCACGCAGTTTTCATCGCATTTTGCGTGTGGCGCGAACATTGGCGGATTTGGCTGGC
GATGAAGTGGTAACACGCGCCCATGTTTTGCGTGCGATTGGATTTCGGCGCGCGTTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.918

99.599

0.527

  comM Vibrio campbellii strain DS40M4

51.497

100

0.517

  comM Glaesserella parasuis strain SC1401

50.598

100

0.509

  comM Haemophilus influenzae Rd KW20

50.1

100

0.501

  comM Legionella pneumophila str. Paris

48.228

100

0.491

  comM Legionella pneumophila strain ERS1305867

48.228

100

0.491

  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.2

100

0.433