Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MF265_RS24785 Genome accession   NZ_CP092184
Coordinates   5121642..5123165 (+) Length   507 a.a.
NCBI ID   WP_143778601.1    Uniprot ID   -
Organism   Serratia marcescens strain YHYF1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5116642..5128165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF265_RS24760 (MF265_24760) - 5116840..5117766 (-) 927 WP_016930475.1 branched-chain amino acid transaminase -
  MF265_RS24765 (MF265_24765) ilvM 5117790..5118047 (-) 258 WP_004929955.1 acetolactate synthase 2 small subunit -
  MF265_RS24770 (MF265_24770) ilvG 5118044..5119690 (-) 1647 WP_239044050.1 acetolactate synthase 2 catalytic subunit -
  MF265_RS24775 (MF265_24775) ilvL 5119833..5119931 (-) 99 WP_013814970.1 ilv operon leader peptide -
  MF265_RS24780 (MF265_24780) - 5120069..5121301 (-) 1233 WP_049300868.1 MFS transporter -
  MF265_RS24785 (MF265_24785) comM 5121642..5123165 (+) 1524 WP_143778601.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MF265_RS24790 (MF265_24790) - 5123193..5123531 (-) 339 WP_004929946.1 DUF413 domain-containing protein -
  MF265_RS24795 (MF265_24795) hdfR 5123651..5124478 (+) 828 WP_239044051.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54527.78 Da        Isoelectric Point: 7.6226

>NTDB_id=656215 MF265_RS24785 WP_143778601.1 5121642..5123165(+) (comM) [Serratia marcescens strain YHYF1]
MSLALIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINSGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGSLRAVRGAIPAALAAADAGRQLILSMDNAAEVGLIAQSRSHTAQHL
LEVCAFLLGQGELPVAATPPDADNACENADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
AEALESLAIASLQHHIPAALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPARVQLIAAMNPSPTGHYQGLHNRASPQQVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSHRKTH
GESSEQVRKRVQQARARQLERAGKVNALLSNREVERDCVLQAADAEFLEATLNTLGLSVRAWQRILKVARTLADLAGDAE
LDRRHLSEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=656215 MF265_RS24785 WP_143778601.1 5121642..5123165(+) (comM) [Serratia marcescens strain YHYF1]
ATGTCACTGGCGTTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCCGTAACGGTGGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTCGGCCTGCCGGAAACCACGGTAAAAGAGGCGCGCGATCGGGTGCGCAGCGCCCTGA
TCAACAGCGGTTTCACCTTTCCCGCCCGGCGCATCACCGTCAATTTGGCGCCCGCCGATCTGCCAAAAGAAGGCGGGCGT
TACGATCTGCCGATAGCGCTGGCGATCCTCGCCGCCTCCGAGCAATTGCCCCTCGCGCCGTTGGCGCGCTACGAGTTTCT
TGGCGAGCTCGCGCTGTCTGGCTCACTGCGCGCGGTCAGGGGAGCGATCCCGGCGGCACTGGCGGCGGCTGATGCCGGGC
GGCAACTGATCCTCTCGATGGACAACGCCGCCGAAGTCGGCCTGATCGCGCAGTCGCGCTCCCATACCGCCCAACACCTG
CTGGAAGTCTGCGCTTTTTTGCTCGGCCAAGGCGAACTGCCGGTAGCGGCCACGCCCCCCGATGCGGACAACGCGTGCGA
AAACGCCGACCTGCGCGACATCATCGGTCAGGAACAGGCCAAGCGGGCATTAGAGATCGCCGCCGCCGGCGGGCATAACC
TGCTGTTGATTGGGCCACCGGGCACCGGTAAAACCATGCTGGCCAGCCGTCTCACGGGCTTGCTGCCGCCGCTGACGGAG
GCTGAGGCGCTGGAAAGCCTGGCGATCGCCAGCTTGCAGCATCACATTCCCGCCGCGCTACCATGGCGCCAGAGGCCGTT
TCGCGCGCCGCACCACAGCGCCTCGATGGCGGCATTGGTCGGCGGCGGCTCACTGCCGCGACCGGGCGAGATCTCGATGG
CGCATAACGGCGTGCTGTTTCTGGATGAACTGCCGGAATTCGAGCGTAAGGTACTGGATGCGCTGCGTGAGCCGTTGGAA
TCCGGCGAGATCGTGATTTCACGTGCCAACGCCAAGGTCTGTTTCCCCGCCAGGGTGCAACTGATCGCGGCAATGAACCC
CAGTCCGACAGGGCATTATCAGGGGTTGCACAATCGCGCCTCACCGCAGCAGGTGTTGCGCTATCTGGCCCGGCTGTCAG
GGCCTTTTCTCGACCGTTTCGATCTGTCTATCGAAGTGCCGTTGTTGCCGCCGGGTACGCTCAGTCATCGGAAAACCCAT
GGAGAAAGCAGCGAACAAGTACGGAAAAGGGTGCAGCAGGCACGCGCCCGGCAGCTCGAACGCGCCGGTAAAGTCAACGC
GCTGTTGAGCAACCGTGAAGTGGAACGAGATTGCGTTTTGCAGGCGGCAGACGCCGAGTTTTTGGAAGCGACATTAAACA
CGCTGGGGTTATCGGTCCGCGCCTGGCAGCGCATCTTGAAAGTGGCGCGCACGCTGGCGGATTTGGCGGGAGATGCTGAG
CTCGACAGGCGCCACCTCAGCGAAGCGCTGGGCTATCGCAGTATGGACCGTCTGCTGTTACAACTGCATCGCAGTCTGGA
ATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.81

99.803

0.657
  comM Glaesserella parasuis strain SC1401

65.422

100

0.657
  comM Vibrio cholerae strain A1552

66.135

99.014

0.655
  comM Vibrio campbellii strain DS40M4

64.542

99.014

0.639
  comM Legionella pneumophila str. Paris

51.406

98.225

0.505
  comM Legionella pneumophila strain ERS1305867

51.406

98.225

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.079

100

0.452