Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L3Q72_RS14760 Genome accession   NZ_CP092106
Coordinates   3290325..3291848 (-) Length   507 a.a.
NCBI ID   WP_275130647.1    Uniprot ID   -
Organism   Vibrio sp. JC009     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3285325..3296848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3Q72_RS14735 (L3Q72_14725) - 3285497..3285763 (+) 267 WP_275130643.1 YihD family protein -
  L3Q72_RS14740 (L3Q72_14730) ccoG 3286007..3287428 (+) 1422 WP_275130644.1 cytochrome c oxidase accessory protein CcoG -
  L3Q72_RS14745 (L3Q72_14735) - 3287413..3288411 (+) 999 WP_275130645.1 serine/threonine protein kinase -
  L3Q72_RS14750 (L3Q72_14740) - 3288423..3289325 (-) 903 WP_275130646.1 DMT family transporter -
  L3Q72_RS14755 (L3Q72_14745) - 3289331..3290218 (-) 888 WP_275132126.1 acyltransferase -
  L3Q72_RS14760 (L3Q72_14750) comM 3290325..3291848 (-) 1524 WP_275130647.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L3Q72_RS14765 (L3Q72_14755) ilvG 3292305..3293951 (+) 1647 WP_275130648.1 acetolactate synthase 2 catalytic subunit -
  L3Q72_RS14770 (L3Q72_14760) ilvM 3293951..3294226 (+) 276 WP_275130649.1 acetolactate synthase 2 small subunit -
  L3Q72_RS14775 (L3Q72_14765) - 3294241..3295179 (+) 939 WP_275130650.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54474.29 Da        Isoelectric Point: 6.5807

>NTDB_id=655921 L3Q72_RS14760 WP_275130647.1 3290325..3291848(-) (comM) [Vibrio sp. JC009]
MGLAIIRSRASVGVEAPEVLVEVHISNGMPGFALVGLPETTVKESKDRVRSAILNSQFELPPKKITVNLAPADLPKEGGR
FDLPIALGILAASGQIPVSKLDDHEFIGELALSGEIRSVKGVLPAALAANRSDRCLVVPDTDGGQAALVGEDTHKSASGL
VEVCAYLCGQGALGLQVPKSSESFSDHSRDLQDIIGQQQGKRALEIAAAGSHNLLFVGPPGTGKTMLASRLCDLLPDMTD
TEALETASVASLTQQEINQDNWKTRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAAGKTRFPARFQLVGALNPSPTGYYEGSQARENPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGER
GEPTSVVRERVLRARELMDKRAGKVNALLGSREIDKYCPLEKPDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSAD
ISRKHLAEALGYRSMDRLLKQLAAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=655921 L3Q72_RS14760 WP_275130647.1 3290325..3291848(-) (comM) [Vibrio sp. JC009]
ATGGGACTCGCAATTATCCGAAGCAGGGCAAGCGTTGGAGTTGAAGCACCTGAAGTGCTGGTTGAAGTGCATATTAGCAA
TGGTATGCCAGGTTTTGCTTTAGTGGGGCTTCCTGAAACGACGGTTAAAGAATCTAAGGACAGGGTCCGCAGCGCTATCC
TTAATTCGCAGTTTGAACTTCCGCCGAAAAAGATCACCGTCAATCTGGCTCCTGCCGATTTACCGAAAGAAGGAGGCAGA
TTTGACCTGCCGATTGCTCTGGGAATCCTGGCTGCCTCCGGGCAGATACCGGTAAGTAAGCTCGATGATCATGAATTTAT
CGGAGAGCTGGCTTTGTCCGGTGAGATTCGCTCAGTAAAAGGCGTTCTTCCTGCTGCCTTAGCTGCAAACCGTTCCGACA
GGTGTTTAGTCGTTCCGGATACCGATGGCGGGCAGGCTGCTCTGGTTGGTGAAGATACCCACAAGTCAGCCTCGGGTTTG
GTGGAAGTATGTGCTTACTTATGTGGTCAGGGAGCTTTAGGGTTACAGGTGCCCAAAAGCTCTGAAAGCTTCTCAGACCA
CTCCAGAGACCTGCAGGATATTATTGGTCAGCAGCAGGGAAAACGTGCTCTGGAGATAGCGGCTGCCGGATCACACAACC
TTCTGTTCGTAGGGCCTCCCGGAACAGGGAAGACCATGCTGGCATCGCGTTTGTGCGATCTTTTACCTGATATGACGGAT
ACAGAAGCGCTGGAAACTGCTTCAGTGGCATCTTTAACTCAGCAGGAGATTAATCAGGATAACTGGAAAACCCGTCCGTT
TCGTTCACCGCACCATTCCAGTTCAATGGCTGCGCTGGTTGGGGGAGGGTCGGTTCCCAGACCGGGTGAGATCTCCCTTG
CTCACAACGGCCTTTTGTTCCTTGATGAGATGCCCGAATTTGAACGAAAAGTTCTCGATTCATTAAGAGAACCGCTGGAG
TCCGGTGAAATAGTTATTTCCCGCGCGGCAGGTAAGACCCGTTTCCCGGCCCGGTTTCAGTTAGTTGGAGCGTTGAACCC
AAGCCCTACTGGGTATTACGAAGGTTCTCAGGCAAGAGAGAATCCTCAGGCAATACTGCGTTATCTCGGCAGGCTGTCCG
GTCCTTTGCTGGACAGGTTCGATATGTCTCTGGAAATTCCCGCACTGCCCAAGGGAACCCTTTCAGAAGGTGGAGAGCGG
GGCGAGCCGACATCGGTGGTCAGAGAGCGAGTGCTTAGAGCTCGCGAGTTAATGGACAAGCGTGCAGGAAAGGTAAATGC
GTTACTTGGCAGCAGAGAGATTGATAAGTATTGCCCGCTGGAGAAGCCAGATGCTGAATTTCTGGAGAACGCACTTCACC
GCTTAGGATTATCTATTCGTGCTTATCACCGGATTATTAAGGTAGCCAGAACCATTGCAGACCTTGAAGGAAGTGCAGAT
ATCAGCAGAAAACATCTGGCTGAGGCTTTGGGTTATCGTTCAATGGACAGGTTACTTAAACAATTAGCGGCTCAGGCGGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

82.874

100

0.83
  comM Vibrio cholerae strain A1552

81.657

100

0.817
  comM Haemophilus influenzae Rd KW20

63.905

100

0.639
  comM Glaesserella parasuis strain SC1401

62.035

100

0.625
  comM Legionella pneumophila str. Paris

50.403

97.83

0.493
  comM Legionella pneumophila strain ERS1305867

50.403

97.83

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.98

98.225

0.442