Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JN531_RS08215 Genome accession   NZ_CP092104
Coordinates   1753906..1755408 (-) Length   500 a.a.
NCBI ID   WP_228348384.1    Uniprot ID   -
Organism   Flagellatimonas centrodinii strain R2A-3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1748906..1760408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN531_RS08195 (JN531_008195) - 1749939..1751198 (+) 1260 WP_228348380.1 multifunctional CCA addition/repair protein -
  JN531_RS08200 (JN531_008200) - 1751240..1751722 (+) 483 WP_228348381.1 c-type cytochrome -
  JN531_RS08205 (JN531_008205) - 1751940..1752998 (+) 1059 WP_228348382.1 porin -
  JN531_RS08210 (JN531_008210) - 1753147..1753851 (+) 705 WP_228348383.1 TorF family putative porin -
  JN531_RS08215 (JN531_008215) comM 1753906..1755408 (-) 1503 WP_228348384.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JN531_RS08220 (JN531_008220) - 1755415..1755669 (-) 255 WP_228348385.1 accessory factor UbiK family protein -
  JN531_RS08225 (JN531_008225) - 1755800..1755901 (+) 102 Protein_1624 P-II family nitrogen regulator -
  JN531_RS08230 (JN531_008230) - 1756069..1757043 (-) 975 WP_228349980.1 IS5 family transposase -
  JN531_RS08235 (JN531_008235) - 1757132..1757374 (+) 243 Protein_1626 P-II family nitrogen regulator -
  JN531_RS08240 (JN531_008240) - 1757537..1758823 (+) 1287 WP_366522425.1 ammonium transporter -
  JN531_RS08245 (JN531_008245) - 1758941..1759279 (+) 339 WP_228348387.1 P-II family nitrogen regulator -
  JN531_RS08250 (JN531_008250) - 1759528..1760403 (-) 876 WP_239795281.1 hypothetical protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52458.61 Da        Isoelectric Point: 8.8457

>NTDB_id=655875 JN531_RS08215 WP_228348384.1 1753906..1755408(-) (comM) [Flagellatimonas centrodinii strain R2A-3]
MALATVLARAQNGLSADLVSVEVHLANGLPALNIVGLPEAAVREAKDRVRAAIVNSGYHFPQRRITINLAPADLPKHGGR
FDLAIALGILLAQGDLPAGSLDGVEVLGELSLSGALRPVTGALPAALQAAASQHRLLLPAANAAEAQRCPDADILPAHHL
GAVCGALHGEGLKPAPTPPPECPDMVHPDLREVRGQAQAKRALEIVAAGGHSLLMVGPPGAGKSMLASRLPGLLPPLDTP
AALEVAAIASISHEGFNPERWRQRPFRAPHHSASGMALVGGGGQPRPGEITLAHRGVLFLDELPEFPRAVLDLLRQPLET
GEVHVARVARQVTFPARFQLVAAMNPCPCGYLGDRGRDCRCTPDAVRRYRARLSGPLLDRIDLQLFVPRAERAAVLDTAP
PSGPGSAAIRRRVTAALARQMARQGRPNADLSAAAVAALPVSDAARTLLVQAMDRLQLSARGAHRALKVAQTVADLVEAP
RIEPPMMAEALGYRALDSDA

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=655875 JN531_RS08215 WP_228348384.1 1753906..1755408(-) (comM) [Flagellatimonas centrodinii strain R2A-3]
GTGGCCCTTGCCACGGTCCTGGCGCGCGCCCAGAACGGGCTGTCCGCCGATCTCGTCAGTGTTGAGGTTCACCTCGCCAA
CGGCCTGCCAGCGCTGAATATCGTCGGCCTGCCCGAGGCCGCGGTGCGCGAAGCCAAGGACCGGGTCCGTGCCGCCATCG
TCAACAGCGGCTACCACTTCCCACAGCGGCGCATCACCATCAACCTGGCCCCGGCCGACCTGCCCAAGCATGGTGGCCGT
TTCGATCTGGCCATCGCCCTTGGCATTCTGTTGGCCCAGGGCGACCTGCCAGCCGGCAGCCTTGATGGCGTCGAGGTGCT
GGGCGAACTGTCGCTATCGGGCGCACTACGGCCGGTCACCGGTGCCCTGCCCGCGGCACTGCAGGCGGCCGCCAGCCAGC
ACCGCCTGCTGCTGCCGGCGGCCAACGCCGCCGAAGCCCAGCGCTGCCCCGACGCCGACATTCTGCCGGCGCACCATTTG
GGGGCAGTCTGCGGCGCGCTTCACGGCGAAGGTCTCAAACCGGCACCGACGCCGCCGCCCGAATGCCCCGATATGGTGCA
CCCCGATCTGCGGGAGGTCCGCGGCCAGGCCCAGGCCAAACGCGCACTCGAGATCGTCGCCGCTGGCGGCCACTCGCTGC
TGATGGTGGGGCCGCCGGGCGCTGGCAAGTCGATGCTCGCCAGCCGTCTTCCGGGGCTGTTGCCGCCCCTGGACACCCCC
GCAGCGCTGGAAGTGGCGGCCATCGCCTCGATCAGCCACGAGGGATTCAATCCCGAGCGATGGCGGCAGCGGCCGTTCCG
CGCGCCCCACCACTCGGCGTCGGGCATGGCCCTGGTCGGCGGCGGCGGCCAGCCGCGGCCGGGGGAGATCACCCTCGCCC
ATCGTGGCGTTCTATTTCTTGATGAGCTGCCGGAGTTTCCGCGTGCAGTGCTTGACCTGCTGCGGCAGCCGCTGGAAACC
GGCGAGGTGCATGTGGCGCGGGTGGCGCGGCAGGTCACCTTCCCCGCCCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCCTGTGGCTATCTCGGCGATCGCGGCCGCGACTGCCGCTGCACGCCCGATGCGGTCCGCCGCTATCGCGCCCGGCTGT
CCGGCCCGCTGCTGGACCGCATCGACCTGCAACTGTTCGTGCCCCGCGCCGAGCGCGCGGCGGTGCTCGATACTGCCCCG
CCCAGCGGCCCCGGATCGGCGGCGATCCGCCGGCGGGTGACCGCCGCCCTGGCCCGCCAGATGGCCCGCCAGGGACGGCC
CAATGCCGACCTGTCGGCCGCCGCGGTGGCGGCGCTGCCAGTGAGCGATGCCGCCCGCACCCTGTTGGTGCAGGCAATGG
ACCGCCTGCAGTTGTCGGCCCGCGGCGCCCACCGGGCGCTCAAGGTGGCGCAGACCGTGGCCGATCTCGTCGAAGCGCCC
CGCATCGAGCCCCCGATGATGGCCGAAGCCCTGGGCTACCGTGCGCTGGACAGCGACGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

50.501

99.8

0.504
  comM Vibrio cholerae strain A1552

49.299

99.8

0.492
  comM Haemophilus influenzae Rd KW20

48.606

100

0.488
  comM Glaesserella parasuis strain SC1401

47.809

100

0.48
  comM Legionella pneumophila str. Paris

47.581

99.2

0.472
  comM Legionella pneumophila strain ERS1305867

47.581

99.2

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.65

100

0.424