Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MBA36_RS01355 Genome accession   NZ_CP092042
Coordinates   288504..289028 (+) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter cloacae isolate AVS0889     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 289921..290618 288504..289028 flank 893


Gene organization within MGE regions


Location: 288504..290618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MBA36_RS01355 (MBA36_01355) ssb 288504..289028 (+) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  MBA36_RS01360 (MBA36_01360) - 289091..289372 (-) 282 WP_008503385.1 YjcB family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=655365 MBA36_RS01355 WP_003860284.1 288504..289028(+) (ssb) [Enterobacter cloacae isolate AVS0889]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=655365 MBA36_RS01355 WP_003860284.1 288504..289028(+) (ssb) [Enterobacter cloacae isolate AVS0889]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTATTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGCTCTCAGGTTTATATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACTGAAGTGGTGGTAAACGTTGG
TGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCAGCAGGTGGTGGCCAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCCGCACCGGCACCG
TCTAACGAACCGCCAATGGACTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374