Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ANG_RS02975 Genome accession   NZ_AP013072
Coordinates   583534..584460 (+) Length   308 a.a.
NCBI ID   WP_003035531.1    Uniprot ID   I0SFJ9
Organism   Streptococcus anginosus subsp. whileyi MAS624     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 578534..589460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANG_RS02965 (ANG_0595) amiA3 579682..581661 (+) 1980 WP_025271648.1 peptide ABC transporter substrate-binding protein Regulator
  ANG_RS02970 (ANG_0596) amiC 582038..583534 (+) 1497 WP_003035572.1 ABC transporter permease Regulator
  ANG_RS02975 (ANG_0597) amiD 583534..584460 (+) 927 WP_003035531.1 oligopeptide ABC transporter permease OppC Regulator
  ANG_RS02980 (ANG_0598) amiE 584469..585536 (+) 1068 WP_020999798.1 ABC transporter ATP-binding protein Regulator
  ANG_RS02985 (ANG_0599) amiF 585547..586470 (+) 924 WP_003031730.1 ATP-binding cassette domain-containing protein Regulator
  ANG_RS02990 - 586656..587480 (+) 825 Protein_577 Cof-type HAD-IIB family hydrolase -
  ANG_RS02995 (ANG_0602) - 587553..588518 (-) 966 WP_003035453.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34470.50 Da        Isoelectric Point: 9.7392

>NTDB_id=65509 ANG_RS02975 WP_003035531.1 583534..584460(+) (amiD) [Streptococcus anginosus subsp. whileyi MAS624]
MATIDKTKFQFVKRDDFASETIDAPAYSYWKSVMRQFLKKKSTVIMLGILVAIILMSFIYPIFSDFDFNDVSKVNDFGAR
YIKPNGQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRIMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRIQILRYRDLEYNLASRTLGTPTLKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=65509 ANG_RS02975 WP_003035531.1 583534..584460(+) (amiD) [Streptococcus anginosus subsp. whileyi MAS624]
ATGGCTACAATTGATAAGACTAAGTTCCAATTTGTCAAACGCGATGATTTTGCCTCTGAAACAATTGATGCTCCAGCCTA
TTCTTACTGGAAGTCAGTTATGCGTCAGTTCCTAAAAAAGAAATCAACAGTTATCATGTTGGGAATTTTGGTCGCTATTA
TTTTGATGAGTTTCATTTATCCGATTTTCTCAGATTTTGACTTTAACGATGTCAGCAAGGTGAATGATTTCGGTGCGCGT
TATATTAAACCAAACGGTCAATATTGGTTTGGTACAGATAGCAACGGGAAATCTCTTTTTGACGGAGTATGGTTTGGAGC
TCGTAACTCCATCCTCATTTCTGTCATTGCAACCGTGATTAACTTAGTTATTGGTATTGTGATTGGTGGTATCTGGGGAA
TTTCAAAAACCGTTGACCGTATCATGATGGAAGTGTACAATATCATTTCTAACATCCCATCTCTCTTGATTGTCATTGTC
TTGACTTATTCAATTGGTGCTGGTTTCTGGAACTTGATTTTTGCTATGACCATCACAGGTTGGGTTGGGATTGCTTATAC
GATTCGTATCCAAATTCTACGTTATCGTGATTTAGAATACAACCTCGCCAGTCGTACATTGGGAACGCCAACGCTTAAAA
TTATTGTGAAAAATATTATGCCACAGTTGGTTTCTGTGATTGTTACAACTGCTTCACAATTACTTCCAAGTTTCATTTCA
TACGAAGCTTTTCTGTCTTTCTTTGGTTTGGGACTTCCTGTGACGGTGCCAAGTTTGGGACGGTTAATTTCAGATTATTC
ACAAAACGTGACAACAAATGCGTATCTTTTCTGGATTCCATTGACAACCTTGATTTTGGTTTCTCTTTCATTGTTCGTTG
TCGGTCAAAACTTAGCGGACGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SFJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

86.688

100

0.867
  amiD Streptococcus thermophilus LMG 18311

84.74

100

0.847
  amiD Streptococcus thermophilus LMD-9

84.74

100

0.847

Multiple sequence alignment