Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L8M16_RS00920 Genome accession   NZ_CP091977
Coordinates   201777..203270 (+) Length   497 a.a.
NCBI ID   WP_168953534.1    Uniprot ID   -
Organism   Aromatoleum aromaticum strain pCyN1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 196777..208270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8M16_RS00895 - 197451..198476 (+) 1026 WP_168953533.1 2-oxoacid:ferredoxin oxidoreductase subunit beta -
  L8M16_RS00900 - 198619..199971 (-) 1353 WP_011237607.1 ammonium transporter -
  L8M16_RS00905 glnK 199984..200322 (-) 339 WP_011237608.1 P-II family nitrogen regulator -
  L8M16_RS00910 - 200371..201102 (-) 732 WP_041646079.1 TorF family putative porin -
  L8M16_RS00915 - 201389..201652 (+) 264 WP_011237610.1 accessory factor UbiK family protein -
  L8M16_RS00920 comM 201777..203270 (+) 1494 WP_168953534.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L8M16_RS00925 - 203417..204601 (+) 1185 WP_168953535.1 multidrug effflux MFS transporter -
  L8M16_RS00930 - 204546..204794 (-) 249 WP_011237613.1 hypothetical protein -
  L8M16_RS00935 - 204994..206466 (+) 1473 WP_011237614.1 aldehyde dehydrogenase family protein -
  L8M16_RS00940 - 206515..206853 (+) 339 WP_011237615.1 cytochrome c -
  L8M16_RS00945 - 206864..207556 (+) 693 WP_168953536.1 hypothetical protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53096.86 Da        Isoelectric Point: 7.9890

>NTDB_id=654810 L8M16_RS00920 WP_168953534.1 201777..203270(+) (comM) [Aromatoleum aromaticum strain pCyN1]
MSLALVRTRALVGLAAPEVTVEVHLANGLPAFNLVGLADTEVREARDRVRAAIVTSQFEFPQRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIDAGALSRHEFVGELSLNGALRPVRGALAVALETAREGRTLVLPVANADEAALAEDASVLAAASL
LAVCGHLNGRAVLPPHLPPLRSRSGPPEADLAEVKGQLQARRALEVAAAGQHSLLLFGPPGTGKSMLARRLPGLLPPMEQ
AEAIESAAIQSIEGSFDVRHWGRRPYRAPHHSASAPALVGGGADPRPGEISLAHHGVLFLDELPEFDRRVLEALREPLET
GLVTVSRARRRAEFPARFQLVAAMNPCPCGHAGSARCRCSPDQIARYRGKLSGPLLDRIDVIIEVPLLDQAEMLAQPAGE
SSEAVRSRVERAWACQRERQNEPNSRLAAGRVDALCAPDAEGRKLLAHAIERLNLSARGYHRILKVARTIADLADADAIG
PAHLAEAIQYRRGLDTR

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=654810 L8M16_RS00920 WP_168953534.1 201777..203270(+) (comM) [Aromatoleum aromaticum strain pCyN1]
ATGTCGCTGGCTCTCGTACGTACCCGCGCGCTGGTCGGCCTCGCCGCACCGGAAGTGACGGTCGAAGTCCACCTCGCCAA
CGGCCTGCCTGCTTTCAACCTCGTCGGGCTCGCCGACACCGAGGTGCGCGAGGCGCGCGATCGCGTGCGGGCCGCGATCG
TCACGTCGCAGTTCGAGTTCCCGCAGCGTCGCATCACCGTCAACCTCGCCCCCGCCGACCTGCCGAAAGAGGGCGGGCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCGGCATCCGGCCAGATCGATGCGGGCGCGCTGTCGCGACACGAGTTCGT
CGGCGAACTGTCGCTGAATGGCGCACTGCGCCCGGTGCGTGGCGCGCTCGCGGTGGCGCTCGAAACCGCTCGTGAAGGCC
GCACGCTGGTGCTGCCGGTCGCCAACGCGGACGAGGCGGCGCTTGCGGAGGATGCGAGCGTGCTGGCCGCGGCGAGCCTG
CTCGCGGTGTGCGGGCACCTGAACGGGCGTGCCGTGCTTCCGCCTCACCTGCCTCCGCTGCGTAGCCGGAGCGGGCCGCC
CGAGGCCGATCTCGCCGAAGTCAAGGGACAGCTTCAGGCGCGCCGCGCGCTCGAAGTCGCCGCGGCCGGACAGCATTCGC
TGTTGCTGTTCGGGCCCCCGGGAACCGGCAAGTCGATGCTCGCACGGCGCCTGCCCGGGCTGCTGCCGCCGATGGAGCAG
GCCGAAGCGATCGAGAGCGCGGCGATCCAGTCGATCGAAGGCTCGTTCGACGTGCGGCACTGGGGACGCCGCCCGTATCG
CGCGCCGCACCACTCGGCCTCCGCGCCGGCGCTCGTCGGCGGCGGCGCCGATCCGCGGCCGGGCGAGATCAGCCTCGCGC
ACCACGGCGTGCTGTTTCTCGACGAACTGCCCGAATTCGACCGGCGCGTGCTCGAGGCACTGCGCGAGCCGCTCGAAACG
GGTCTCGTCACCGTGTCGCGCGCCCGGCGCCGCGCGGAATTCCCCGCCCGCTTCCAGCTCGTCGCGGCGATGAACCCCTG
TCCGTGCGGCCATGCCGGCAGCGCCCGCTGCCGCTGCTCGCCGGACCAGATCGCGCGCTACCGCGGCAAGCTGTCGGGCC
CGCTGCTCGATCGCATCGATGTCATCATCGAAGTGCCGCTGCTCGACCAGGCCGAGATGCTCGCGCAACCCGCTGGCGAA
TCGAGCGAAGCGGTGCGCTCACGCGTCGAGCGTGCGTGGGCGTGCCAACGCGAGCGCCAGAATGAGCCGAACAGCCGCTT
AGCGGCGGGCCGCGTGGACGCGTTGTGCGCGCCCGACGCCGAAGGCCGCAAGCTCCTGGCCCACGCGATCGAGCGGTTGA
ACCTGTCGGCGCGGGGTTATCATCGCATCCTGAAAGTCGCCCGCACGATCGCCGATCTGGCCGATGCCGACGCCATCGGT
CCGGCGCATCTGGCCGAGGCGATCCAGTATCGACGCGGGCTGGACACGCGATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

53.32

100

0.533
  comM Vibrio campbellii strain DS40M4

52.941

99.195

0.525
  comM Glaesserella parasuis strain SC1401

51.491

100

0.521
  comM Vibrio cholerae strain A1552

52.535

99.195

0.521
  comM Legionella pneumophila str. Paris

50.398

100

0.509
  comM Legionella pneumophila strain ERS1305867

50.398

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.509

100

0.459